Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_G23
         (241 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   1.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   4.9  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    19   6.4  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 1.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 141 KHSKFVRDLVREVVGHAQYEKRAME 215
           K   FV   V EV+ + + EKR  E
Sbjct: 517 KKGSFVTQYVGEVITNEEAEKRGKE 541


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 19.8 bits (39), Expect = 4.9
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +1

Query: 85  VLQTKPLKLG 114
           V+QTK LKLG
Sbjct: 234 VIQTKSLKLG 243


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 19.4 bits (38), Expect = 6.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 127 RAFKPNTLSLSAIWFVKLLG 186
           + F P+TL +   WF   LG
Sbjct: 205 QTFAPSTLVVMLSWFSFWLG 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,369
Number of Sequences: 438
Number of extensions: 1403
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4024224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)