Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_G23
(241 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S ... 55 8e-09
At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S ... 54 1e-08
At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A) 54 1e-08
At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S ... 52 5e-08
At1g34590.1 68414.m04299 hypothetical protein 29 0.43
At5g07410.1 68418.m00848 pectinesterase family protein contains ... 27 1.3
At1g69940.1 68414.m08049 pectinesterase family protein contains ... 27 1.3
At5g07430.1 68418.m00850 pectinesterase family protein contains ... 27 2.3
At1g72290.1 68414.m08357 trypsin and protease inhibitor family p... 27 2.3
At5g60070.1 68418.m07532 ankyrin repeat family protein contains ... 26 4.0
At5g28430.1 68418.m03453 hypothetical protein 26 4.0
At5g07420.1 68418.m00849 pectinesterase family protein contains ... 26 4.0
At4g06603.1 68417.m01028 expressed protein 26 4.0
At3g60930.1 68416.m06816 expressed protein 26 4.0
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ... 25 7.0
At4g22000.1 68417.m03184 expressed protein 25 7.0
At1g14350.1 68414.m01701 myb family transcription factor (MYB124... 25 7.0
At5g24030.1 68418.m02823 C4-dicarboxylate transporter/malic acid... 25 9.3
At4g11420.1 68417.m01840 eukaryotic translation initiation facto... 25 9.3
At4g02110.1 68417.m00282 BRCT domain-containing protein contains... 25 9.3
At1g49660.1 68414.m05569 expressed protein 25 9.3
At1g14690.1 68414.m01756 microtubule associated protein (MAP65/A... 25 9.3
>At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S
RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
swissprot:Q92365
Length = 112
Score = 54.8 bits (126), Expect = 8e-09
Identities = 30/69 (43%), Positives = 40/69 (57%)
Frame = +3
Query: 33 IGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAM 212
+GL KGH T+ + + RP KG +K + F+R+L++EV G A YEKR
Sbjct: 12 VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61
Query: 213 ELLKVSKDK 239
ELLKV KDK
Sbjct: 62 ELLKVGKDK 70
>At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S
ribosomal protein L36, Arabidopsis thaliana,
EMBL:AC004684
Length = 108
Score = 54.0 bits (124), Expect = 1e-08
Identities = 31/69 (44%), Positives = 39/69 (56%)
Frame = +3
Query: 33 IGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAM 212
+GL KGH TK + RP KG +K + F+R+L++EV G A YEKR
Sbjct: 8 VGLNKGHVVTK----------REQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 57
Query: 213 ELLKVSKDK 239
ELLKV KDK
Sbjct: 58 ELLKVGKDK 66
>At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)
Length = 113
Score = 54.0 bits (124), Expect = 1e-08
Identities = 31/69 (44%), Positives = 39/69 (56%)
Frame = +3
Query: 33 IGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAM 212
+GL KGH T+ + + RP KG +K + F+R L+REV G A YEKR
Sbjct: 12 VGLNKGHVVTR----------RELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRIT 61
Query: 213 ELLKVSKDK 239
ELLKV KDK
Sbjct: 62 ELLKVGKDK 70
>At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S
RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
swissprot:Q92365
Length = 103
Score = 52.0 bits (119), Expect = 5e-08
Identities = 29/69 (42%), Positives = 40/69 (57%)
Frame = +3
Query: 33 IGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAM 212
+GL KGH T+ + + RP KG +K + F+R+L++EV G A YEKR
Sbjct: 12 VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61
Query: 213 ELLKVSKDK 239
ELLKV+K K
Sbjct: 62 ELLKVAKRK 70
>At1g34590.1 68414.m04299 hypothetical protein
Length = 820
Score = 29.1 bits (62), Expect = 0.43
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 3 EIMAPRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPAR 122
++ AP E A GH++ + A K G+TD+A + PA+
Sbjct: 772 DLKAPALESAPLSPGGHRSVESVADKAGVTDQAGSLLPAK 811
>At5g07410.1 68418.m00848 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 361
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 80 FASGYLCRFVAFSQTNCDFKSGSHDF 3
FA+ Y C+F F T CD +G+H F
Sbjct: 184 FAAFYNCKFYGFQDTICD-DTGNHFF 208
>At1g69940.1 68414.m08049 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 361
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 80 FASGYLCRFVAFSQTNCDFKSGSHDF 3
FA+ Y C+F F T CD +G+H F
Sbjct: 184 FAAFYNCKFYGFQDTICD-DTGNHFF 208
>At5g07430.1 68418.m00850 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 361
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 77 ASGYLCRFVAFSQTNCDFKSGSHDF 3
A+ Y CRF F T CD K G+H F
Sbjct: 185 AAFYSCRFHGFQDTLCDDK-GNHFF 208
>At1g72290.1 68414.m08357 trypsin and protease inhibitor family
protein / Kunitz family protein similar to water-soluble
chlorophyll protein [Raphanus sativus var. niger]
GI:16945735, BnD22 drought induced protein [Brassica
napus] GI:17813; contains Pfam profile PF00197: Trypsin
and protease inhibitor
Length = 215
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 115 GLILMALSVIPFLPADIFVVLWPFRRPIAIS 23
GL+ A++V+PF P I L P++ + +S
Sbjct: 55 GLVPAAITVLPFCPLGITQTLLPYQPGLPVS 85
>At5g60070.1 68418.m07532 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 548
Score = 25.8 bits (54), Expect = 4.0
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 24 EIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQ 137
++ + L KGH+++ A KG T + R R+K ++
Sbjct: 225 DVVVELMKGHRSSLNMADSKGNTALHVATRKGRIKIVE 262
>At5g28430.1 68418.m03453 hypothetical protein
Length = 486
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 3 EIMAPRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPAR 122
++ AP E A GH++ + A + GITD+A + PA+
Sbjct: 438 DLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 477
>At5g07420.1 68418.m00849 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 361
Score = 25.8 bits (54), Expect = 4.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 77 ASGYLCRFVAFSQTNCDFKSGSHDF 3
A+ Y CRF F T CD + G+H F
Sbjct: 185 AAFYNCRFYGFQDTLCDDR-GNHFF 208
>At4g06603.1 68417.m01028 expressed protein
Length = 786
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 3 EIMAPRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPAR 122
++ AP E A GH++ + A + GITD+A + PA+
Sbjct: 738 DLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 777
>At3g60930.1 68416.m06816 expressed protein
Length = 798
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 3 EIMAPRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPAR 122
++ AP E A GH++ + A + GITD+A + PA+
Sbjct: 750 DLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 789
>At5g03360.1 68418.m00289 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 1610
Score = 25.0 bits (52), Expect = 7.0
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 187 THSMRRGQWNCSKYRK 234
THS +G W+C RK
Sbjct: 337 THSFEKGDWSCGVCRK 352
>At4g22000.1 68417.m03184 expressed protein
Length = 130
Score = 25.0 bits (52), Expect = 7.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 42 RKGHKTTKISAGKKGITDKAIKIRPARL 125
RKGHK +ISA K+ T K + P L
Sbjct: 81 RKGHKCDRISAEKRENTAKLMLKMPQML 108
>At1g14350.1 68414.m01701 myb family transcription factor (MYB124)
contains PFAM profile: PF00249 myb-like DNA binding
domain
Length = 436
Score = 25.0 bits (52), Expect = 7.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 48 GHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRD 164
G++ T+I+ G TD A+K R L + KH +D
Sbjct: 96 GNRWTEIAKVVSGRTDNAVKNRFTTLCKKRAKHEAMTKD 134
>At5g24030.1 68418.m02823 C4-dicarboxylate transporter/malic acid
transport family protein weak similarity to SP|P25396
Tellurite resistance protein tehA. {Escherichia coli};
contains Pfam profile PF03595: C4-dicarboxylate
transporter/malic acid transport protein
Length = 635
Score = 24.6 bits (51), Expect = 9.3
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = -1
Query: 157 TNLECLV*MPFSLAGLILMALSVIPFLPADIFVVLWPFRRPIAISNR 17
T + C+V ++A L++ AL V + A + L+P IAISNR
Sbjct: 538 TQIMCVVLC--AIATLVVFALLVTTIIHAFVLRDLFPNDLAIAISNR 582
>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
eukaryotic translation initiation factor 3 subunit 10
(eIF-3 theta) (Eukaryotic translation initiation factor
3 large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
SWISS-PROT:Q9LD55
Length = 987
Score = 24.6 bits (51), Expect = 9.3
Identities = 11/67 (16%), Positives = 34/67 (50%)
Frame = +3
Query: 39 LRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAMEL 218
L++ ++ +++ K+ + I R A I+T+ + + ++RE +++ +
Sbjct: 737 LKEKNRLSRMLGNKEIFQAQVISRRQAEFDRIRTEREERISKIIREKKQERDIKRKQIYY 796
Query: 219 LKVSKDK 239
LK+ +++
Sbjct: 797 LKIEEER 803
>At4g02110.1 68417.m00282 BRCT domain-containing protein contains
Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 1293
Score = 24.6 bits (51), Expect = 9.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 13 LPDLKSQLVCEKATKRQRYPLAKRVLQTK 99
+P K+ +VC + ++Y LAKR+ + K
Sbjct: 106 IPGSKALVVCLTGYQGEKYELAKRIKRIK 134
>At1g49660.1 68414.m05569 expressed protein
Length = 319
Score = 24.6 bits (51), Expect = 9.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 6 IMAPRFEIAIGLRKGHKTTKISAGKK 83
I +P +++ L HK+TK++AG K
Sbjct: 46 IYSPENNLSVRLFLPHKSTKLTAGNK 71
>At1g14690.1 68414.m01756 microtubule associated protein
(MAP65/ASE1) family protein low similarity to SP|P32380
NUF1 protein (Spindle poly body spacer protein SPC110)
{Saccharomyces cerevisiae}, smooth muscle myosin heavy
chain [Homo sapiens] GI:4417214; contains Pfam profile
PF03999: Microtubule associated protein (MAP65/ASE1
family)
Length = 707
Score = 24.6 bits (51), Expect = 9.3
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +3
Query: 30 AIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRA 209
A+G+ H K G K + +K +RP L+ ++ + + ++ V ++ AQ EK +
Sbjct: 68 ALGVFNSHSPMKAKEGSKSLKEKLAAVRP-MLEDLRLQKDERMKQFV-DI--KAQIEKMS 123
Query: 210 MEL 218
E+
Sbjct: 124 GEI 126
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,605,648
Number of Sequences: 28952
Number of extensions: 96165
Number of successful extensions: 280
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,070,560
effective HSP length: 58
effective length of database: 10,391,344
effective search space used: 218218224
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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