Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_G22
         (324 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    60   8e-11
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz...    38   5e-04
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    36   0.002
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    27   0.53 
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   0.53 
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   0.53 
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    26   1.2  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    26   1.2  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   1.2  
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo...    25   2.8  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   3.7  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    24   6.5  
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    24   6.5  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    24   6.5  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    24   6.5  

>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 60.1 bits (139), Expect = 8e-11
 Identities = 27/62 (43%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 141 CYKCNRTGHFAREC-TQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGT 317
           CYKC R GH AR+C T G       G +R    C+ C   GH ARDC     +CY C   
Sbjct: 85  CYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGV-KCYSCGKI 143

Query: 318 GH 323
           GH
Sbjct: 144 GH 145



 Score = 54.8 bits (126), Expect = 3e-09
 Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
 Frame = +3

Query: 135 SVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDC-----KEEADRC 299
           S+CY CN+TGH A ECT+           +Q + C+ C   GH  RDC       +   C
Sbjct: 36  SICYNCNQTGHKASECTE----------PQQEKTCYACGTAGHLVRDCPSSPNPRQGAEC 85

Query: 300 YRCNGTGH 323
           Y+C   GH
Sbjct: 86  YKCGRVGH 93



 Score = 53.6 bits (123), Expect = 7e-09
 Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +3

Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKE--EADRCYRCNG 314
           CY C   GH ARECT+G +             C+ CN+TGH A +C E  +   CY C  
Sbjct: 19  CYNCGENGHQARECTKGSI-------------CYNCNQTGHKASECTEPQQEKTCYACGT 65

Query: 315 TGH 323
            GH
Sbjct: 66  AGH 68



 Score = 49.2 bits (112), Expect = 2e-07
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +3

Query: 129 SSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEAD--RCY 302
           S+  CY C   GH AR+CT G              KC+ C + GH + +C++ +D   CY
Sbjct: 114 SNMNCYACGSYGHQARDCTMG-------------VKCYSCGKIGHRSFECQQASDGQLCY 160

Query: 303 RCNGTGH 323
           +CN  GH
Sbjct: 161 KCNQPGH 167



 Score = 39.9 bits (89), Expect = 9e-05
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 222 RQREKCFKCNRTGHFARDCKEEADRCYRCNGTGH 323
           R   +C+ C   GH AR+C  +   CY CN TGH
Sbjct: 14  RPGPRCYNCGENGHQAREC-TKGSICYNCNQTGH 46



 Score = 30.7 bits (66), Expect = 0.057
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 138 VCYKCNRTGHFARECT 185
           +CYKCN+ GH A  CT
Sbjct: 158 LCYKCNQPGHIAVNCT 173


>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 218

 Score = 37.5 bits (83), Expect = 5e-04
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = +3

Query: 222 RQREK-CFKCNRTGHFARDCKEEADR---CYRCNGTGH 323
           R R+K CF C + GH  +DC E  D    C+RC    H
Sbjct: 73  RNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEH 110



 Score = 32.3 bits (70), Expect = 0.019
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +3

Query: 120 SKMSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRC 299
           +K + S+C++C    H    C++ G          +  KCF C+  GH +  C++     
Sbjct: 95  AKDNVSICFRCGSKEHSLNACSKKGP--------LKFAKCFICHENGHLSGQCEQNPKGL 146

Query: 300 YRCNG 314
           Y   G
Sbjct: 147 YPKGG 151



 Score = 31.5 bits (68), Expect = 0.033
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
 Frame = +3

Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEAD----RCYRC 308
           C+ C + GH  ++C +    A+D         CF+C    H    C ++      +C+ C
Sbjct: 79  CFACRQQGHIVQDCPE----AKD-----NVSICFRCGSKEHSLNACSKKGPLKFAKCFIC 129

Query: 309 NGTGH 323
           +  GH
Sbjct: 130 HENGH 134


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 35.5 bits (78), Expect = 0.002
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
 Frame = +3

Query: 132 SSVCYKCNRTGHFARECTQ---GGVGARDAGFNRQ---REKCFKCNRTGHFARDCKEEAD 293
           S VC+ C   GH +++C        GA D   + +    +KC  C   GH A  C E   
Sbjct: 86  SIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRK 145

Query: 294 RCYRCNGTGH 323
           R  R   T H
Sbjct: 146 RGPRVCRTCH 155


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 0.53
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 219 NRQREKCFKCNRTGHFARDCKEEA 290
           +RQ  KC +C RT + +++C+ +A
Sbjct: 492 SRQFAKCRRCRRTKYCSKECQHQA 515


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 27.5 bits (58), Expect = 0.53
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 135  SVCYKCNRTGHFAREC 182
            S CYKC +  H  REC
Sbjct: 1804 STCYKCGKADHNLREC 1819



 Score = 25.0 bits (52), Expect = 2.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 237  CFKCNRTGHFARDCK 281
            C+KC +  H  R+CK
Sbjct: 1806 CYKCGKADHNLRECK 1820


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 27.5 bits (58), Expect = 0.53
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 135  SVCYKCNRTGHFAREC 182
            S CYKC +  H  REC
Sbjct: 1804 STCYKCGKADHNLREC 1819



 Score = 25.0 bits (52), Expect = 2.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 237  CFKCNRTGHFARDCK 281
            C+KC +  H  R+CK
Sbjct: 1806 CYKCGKADHNLRECK 1820


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 237 CFKCNRTGHFARDCKEEADRCY 302
           C++C + GH+ + C   AD  Y
Sbjct: 185 CYRCGQKGHWIQACPTNADPNY 206



 Score = 25.4 bits (53), Expect = 2.1
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 138 VCYKCNRTGHFAREC 182
           +CY+C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 156 CCTCSIRLNSFSIRCITC 103
           C TC  R+N  SIRC++C
Sbjct: 38  CSTCK-RINKRSIRCLSC 54


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 15/50 (30%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
 Frame = +3

Query: 132 SSVCYKCNRTGHFARECTQGGVGARDAGFNRQRE-KCFKCNRTGHFARDC 278
           + VC  C   GH   +C +          N      C  C   GH ARDC
Sbjct: 308 NQVCQNCGNVGHRRFDCPER--------INHTMNIVCRHCGSIGHIARDC 349



 Score = 25.4 bits (53), Expect = 2.1
 Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 5/38 (13%)
 Frame = +3

Query: 225 QREKCFKCNRTGHFARDCKEEADR-----CYRCNGTGH 323
           + + C  C   GH   DC E  +      C  C   GH
Sbjct: 307 ENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGH 344


>SPAPB17E12.10c |||SAM-dependent
           methyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +3

Query: 216 FNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 314
           F      CFKC +   F    K+E    Y C+G
Sbjct: 257 FAEDLSMCFKCVKKIQFKTKIKDELYAVYFCSG 289


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 259 PVRLHLKHFSRCRLKPASRAPTPPCVHS 176
           PVR  ++   R +LKP+  AP PP +++
Sbjct: 29  PVRYEVEDDLR-KLKPSRTAPKPPAINT 55


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
            complex subunit Taf111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 979

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 9/31 (29%), Positives = 12/31 (38%)
 Frame = +3

Query: 171  ARECTQGGVGARDAGFNRQREKCFKCNRTGH 263
            AR   + G+     G      KC  C + GH
Sbjct: 925  ARHAAKEGINLNGEGRKPTTRKCSNCGQVGH 955


>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 207 DAGFNRQREKCFKCNRTGHFARDCKEEAD 293
           D      +E   KC+ T  F ++C E+ D
Sbjct: 87  DQNSELSQENLTKCDTTHDFEKNCSEKTD 115


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
 Frame = +3

Query: 234 KCFKCNRTGHFARD------CKEEADRCYRCN 311
           KC  CN   HF  D      C+E+ +RCY C+
Sbjct: 246 KCEFCNT--HFYDDDELFKHCREKHERCYICD 275


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 201 RLRHLACTRGRSAPSCCTCSI 139
           RL+ + C+RG+  P C TC++
Sbjct: 11  RLKKIKCSRGQ--PRCQTCTL 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,057,536
Number of Sequences: 5004
Number of extensions: 17193
Number of successful extensions: 82
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)