Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_G22
(324 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 61 2e-10
U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical pr... 45 1e-05
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 44 2e-05
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 44 2e-05
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 44 2e-05
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 44 3e-05
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 44 3e-05
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 44 3e-05
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 42 1e-04
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 42 1e-04
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ... 33 0.062
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr... 32 0.082
AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical ... 32 0.082
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 32 0.11
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 31 0.19
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 31 0.19
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 31 0.19
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 31 0.25
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 31 0.25
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ... 30 0.44
AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical ... 29 0.77
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 28 1.8
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 28 1.8
AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical ... 28 1.8
Z81546-10|CAH10812.1| 674|Caenorhabditis elegans Hypothetical p... 27 4.1
Z81546-9|CAD45596.2| 782|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z81546-8|CAB04456.1| 676|Caenorhabditis elegans Hypothetical pr... 27 4.1
U80955-3|AAM97944.1| 95|Caenorhabditis elegans Mlp/crp family ... 27 4.1
U80955-1|AAM97945.1| 113|Caenorhabditis elegans Mlp/crp family ... 27 4.1
AY313179-1|AAP79304.1| 782|Caenorhabditis elegans myotubularin-... 27 4.1
AY313177-1|AAP79302.1| 676|Caenorhabditis elegans myotubularin-... 27 4.1
AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical ... 26 7.2
U23513-5|AAP68948.1| 214|Caenorhabditis elegans Hypothetical pr... 25 9.5
U23513-4|AAP68947.1| 322|Caenorhabditis elegans Hypothetical pr... 25 9.5
U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical pr... 25 9.5
DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin p... 25 9.5
AF100656-5|AAF99963.2| 259|Caenorhabditis elegans Hypothetical ... 25 9.5
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 25 9.5
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 61.3 bits (142), Expect = 2e-10
Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQ-------GGVGARDA-GFNRQREKCFKCNRTGHFARDCKE---- 284
CY C GH++R+C GG G R G + +KC+ C R+GH +R+C E
Sbjct: 69 CYNCGGRGHYSRDCPSARSEGGSGGYGGRGGEGRSFGGQKCYNCGRSGHISRECTESGSA 128
Query: 285 EADRCYRCNGTGH 323
E RCY+C TGH
Sbjct: 129 EEKRCYQCQETGH 141
Score = 58.4 bits (135), Expect = 1e-09
Identities = 21/48 (43%), Positives = 27/48 (56%)
Frame = +3
Query: 135 SVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDC 278
S CY C TGHF+R+C +GG G G C+ C GH++RDC
Sbjct: 35 STCYNCQETGHFSRDCPKGGSGGGQRGGGGGGGSCYNCGGRGHYSRDC 82
Score = 54.8 bits (126), Expect = 1e-08
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 13/79 (16%)
Frame = +3
Query: 126 MSSSVCYKCNRTGHFARECTQG-GVGARDAGFNRQREKCFKCNRTGHFARDCKEEAD--- 293
MS CYKC + GH +R C G G R G C+ C TGHF+RDC +
Sbjct: 1 MSDRNCYKCQQPGHISRNCPNGESDGGRRGGGG--GSTCYNCQETGHFSRDCPKGGSGGG 58
Query: 294 ---------RCYRCNGTGH 323
CY C G GH
Sbjct: 59 QRGGGGGGGSCYNCGGRGH 77
Score = 53.2 bits (122), Expect = 4e-08
Identities = 19/51 (37%), Positives = 31/51 (60%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEAD 293
CY C R+GH +RECT+ G + + ++C++C TGH +RDC + +
Sbjct: 109 CYNCGRSGHISRECTESG--------SAEEKRCYQCQETGHISRDCPSQTN 151
>U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical
protein F07E5.5 protein.
Length = 384
Score = 44.8 bits (101), Expect = 1e-05
Identities = 23/65 (35%), Positives = 29/65 (44%)
Frame = +3
Query: 120 SKMSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRC 299
S S VC+KC H EC + GV GF CF C + GH +RDC + +
Sbjct: 249 SSSSDGVCFKCGSMEHSIHECKKKGV----KGF--PYATCFVCKQVGHISRDCHQNVNGV 302
Query: 300 YRCNG 314
Y G
Sbjct: 303 YPDGG 307
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Frame = +3
Query: 123 KMSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADR-- 296
K++ S C+ C GH +C + + D CFKC H +CK++ +
Sbjct: 225 KITGSACFHCREPGHRLADCPKRNSSSSDG-------VCFKCGSMEHSIHECKKKGVKGF 277
Query: 297 ----CYRCNGTGH 323
C+ C GH
Sbjct: 278 PYATCFVCKQVGH 290
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 44.4 bits (100), Expect = 2e-05
Identities = 29/89 (32%), Positives = 35/89 (39%), Gaps = 27/89 (30%)
Frame = +3
Query: 138 VCYKCNRTGHFARECTQ-------------GGVG----------ARDAGFNRQRE----K 236
VCY C + GH +RECT+ GG G D GF E K
Sbjct: 184 VCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMK 243
Query: 237 CFKCNRTGHFARDCKEEADRCYRCNGTGH 323
CF C GH + +C E C+ C GH
Sbjct: 244 CFNCKGEGHRSAECPEPPRGCFNCGEQGH 272
Score = 36.3 bits (80), Expect = 0.005
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Frame = +3
Query: 192 GVGARDAGFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGH 323
G G G + CF C + GH + DC KE R CY C GH
Sbjct: 145 GFGEGGHGGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGH 193
Score = 35.1 bits (77), Expect = 0.012
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEE 287
C+ C + GH + +C + R+ C+ C + GH +R+C EE
Sbjct: 160 CFNCQQPGHRSSDCPEPRK-------EREPRVCYNCQQPGHTSRECTEE 201
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/50 (28%), Positives = 19/50 (38%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEA 290
C+ C GH + EC + G CF C GH + +C A
Sbjct: 244 CFNCKGEGHRSAECPEPPRG------------CFNCGEQGHRSNECPNPA 281
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 44.4 bits (100), Expect = 2e-05
Identities = 29/89 (32%), Positives = 35/89 (39%), Gaps = 27/89 (30%)
Frame = +3
Query: 138 VCYKCNRTGHFARECTQ-------------GGVG----------ARDAGFNRQRE----K 236
VCY C + GH +RECT+ GG G D GF E K
Sbjct: 184 VCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMK 243
Query: 237 CFKCNRTGHFARDCKEEADRCYRCNGTGH 323
CF C GH + +C E C+ C GH
Sbjct: 244 CFNCKGEGHRSAECPEPPRGCFNCGEQGH 272
Score = 36.3 bits (80), Expect = 0.005
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Frame = +3
Query: 192 GVGARDAGFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGH 323
G G G + CF C + GH + DC KE R CY C GH
Sbjct: 145 GFGEGGHGGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGH 193
Score = 35.1 bits (77), Expect = 0.012
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEE 287
C+ C + GH + +C + R+ C+ C + GH +R+C EE
Sbjct: 160 CFNCQQPGHRSSDCPEPRK-------EREPRVCYNCQQPGHTSRECTEE 201
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/50 (28%), Positives = 19/50 (38%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEA 290
C+ C GH + EC + G CF C GH + +C A
Sbjct: 244 CFNCKGEGHRSAECPEPPRG------------CFNCGEQGHRSNECPNPA 281
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 44.4 bits (100), Expect = 2e-05
Identities = 29/89 (32%), Positives = 35/89 (39%), Gaps = 27/89 (30%)
Frame = +3
Query: 138 VCYKCNRTGHFARECTQ-------------GGVG----------ARDAGFNRQRE----K 236
VCY C + GH +RECT+ GG G D GF E K
Sbjct: 184 VCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMK 243
Query: 237 CFKCNRTGHFARDCKEEADRCYRCNGTGH 323
CF C GH + +C E C+ C GH
Sbjct: 244 CFNCKGEGHRSAECPEPPRGCFNCGEQGH 272
Score = 36.3 bits (80), Expect = 0.005
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Frame = +3
Query: 192 GVGARDAGFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGH 323
G G G + CF C + GH + DC KE R CY C GH
Sbjct: 145 GFGEGGHGGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGH 193
Score = 35.1 bits (77), Expect = 0.012
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEE 287
C+ C + GH + +C + R+ C+ C + GH +R+C EE
Sbjct: 160 CFNCQQPGHRSSDCPEPRK-------EREPRVCYNCQQPGHTSRECTEE 201
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/50 (28%), Positives = 19/50 (38%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEA 290
C+ C GH + EC + G CF C GH + +C A
Sbjct: 244 CFNCKGEGHRSAECPEPPRG------------CFNCGEQGHRSNECPNPA 281
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 43.6 bits (98), Expect = 3e-05
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 25/87 (28%)
Frame = +3
Query: 138 VCYKCNRTGHFAREC-------------TQGGVGARDAGF----------NRQRE--KCF 242
VCY C + GH +R+C T G G D GF N +R KCF
Sbjct: 397 VCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCF 456
Query: 243 KCNRTGHFARDCKEEADRCYRCNGTGH 323
C GH + +C E C+ C GH
Sbjct: 457 NCKGEGHRSAECPEPPRGCFNCGEQGH 483
Score = 36.7 bits (81), Expect = 0.004
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Frame = +3
Query: 192 GVGARDAGFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGH 323
G G +D G + CF C + GH + DC KE R CY C GH
Sbjct: 246 GGGGQDRG--ERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGH 292
Score = 36.7 bits (81), Expect = 0.004
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEE 287
C+ C + GH + +C + R+ C+ C + GH +RDC EE
Sbjct: 259 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEE 300
Score = 36.7 bits (81), Expect = 0.004
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Frame = +3
Query: 192 GVGARDAGFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGH 323
G G +D G + CF C + GH + DC KE R CY C GH
Sbjct: 360 GGGGQDRG--ERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGH 406
Score = 36.7 bits (81), Expect = 0.004
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEE 287
C+ C + GH + +C + R+ C+ C + GH +RDC EE
Sbjct: 373 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEE 414
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/60 (26%), Positives = 21/60 (35%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 320
C+ C GH + EC + G CF C GH + +C A G G
Sbjct: 455 CFNCKGEGHRSAECPEPPRG------------CFNCGEQGHRSNECPNPAKPREGAEGEG 502
Score = 27.5 bits (58), Expect = 2.3
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 138 VCYKCNRTGHFARECTQ 188
VCY C + GH +R+C +
Sbjct: 283 VCYNCQQPGHNSRDCPE 299
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 43.6 bits (98), Expect = 3e-05
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 25/87 (28%)
Frame = +3
Query: 138 VCYKCNRTGHFAREC-------------TQGGVGARDAGF----------NRQRE--KCF 242
VCY C + GH +R+C T G G D GF N +R KCF
Sbjct: 397 VCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCF 456
Query: 243 KCNRTGHFARDCKEEADRCYRCNGTGH 323
C GH + +C E C+ C GH
Sbjct: 457 NCKGEGHRSAECPEPPRGCFNCGEQGH 483
Score = 36.7 bits (81), Expect = 0.004
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Frame = +3
Query: 192 GVGARDAGFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGH 323
G G +D G + CF C + GH + DC KE R CY C GH
Sbjct: 246 GGGGQDRG--ERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGH 292
Score = 36.7 bits (81), Expect = 0.004
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEE 287
C+ C + GH + +C + R+ C+ C + GH +RDC EE
Sbjct: 259 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEE 300
Score = 36.7 bits (81), Expect = 0.004
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Frame = +3
Query: 192 GVGARDAGFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGH 323
G G +D G + CF C + GH + DC KE R CY C GH
Sbjct: 360 GGGGQDRG--ERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGH 406
Score = 36.7 bits (81), Expect = 0.004
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEE 287
C+ C + GH + +C + R+ C+ C + GH +RDC EE
Sbjct: 373 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEE 414
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/60 (26%), Positives = 21/60 (35%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 320
C+ C GH + EC + G CF C GH + +C A G G
Sbjct: 455 CFNCKGEGHRSAECPEPPRG------------CFNCGEQGHRSNECPNPAKPREGAEGEG 502
Score = 27.5 bits (58), Expect = 2.3
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 138 VCYKCNRTGHFARECTQ 188
VCY C + GH +R+C +
Sbjct: 283 VCYNCQQPGHNSRDCPE 299
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 43.6 bits (98), Expect = 3e-05
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 25/87 (28%)
Frame = +3
Query: 138 VCYKCNRTGHFAREC-------------TQGGVGARDAGF----------NRQRE--KCF 242
VCY C + GH +R+C T G G D GF N +R KCF
Sbjct: 397 VCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCF 456
Query: 243 KCNRTGHFARDCKEEADRCYRCNGTGH 323
C GH + +C E C+ C GH
Sbjct: 457 NCKGEGHRSAECPEPPRGCFNCGEQGH 483
Score = 36.7 bits (81), Expect = 0.004
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Frame = +3
Query: 192 GVGARDAGFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGH 323
G G +D G + CF C + GH + DC KE R CY C GH
Sbjct: 246 GGGGQDRG--ERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGH 292
Score = 36.7 bits (81), Expect = 0.004
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEE 287
C+ C + GH + +C + R+ C+ C + GH +RDC EE
Sbjct: 259 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEE 300
Score = 36.7 bits (81), Expect = 0.004
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Frame = +3
Query: 192 GVGARDAGFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGH 323
G G +D G + CF C + GH + DC KE R CY C GH
Sbjct: 360 GGGGQDRG--ERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGH 406
Score = 36.7 bits (81), Expect = 0.004
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEE 287
C+ C + GH + +C + R+ C+ C + GH +RDC EE
Sbjct: 373 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEE 414
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/60 (26%), Positives = 21/60 (35%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 320
C+ C GH + EC + G CF C GH + +C A G G
Sbjct: 455 CFNCKGEGHRSAECPEPPRG------------CFNCGEQGHRSNECPNPAKPREGAEGEG 502
Score = 27.5 bits (58), Expect = 2.3
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 138 VCYKCNRTGHFARECTQ 188
VCY C + GH +R+C +
Sbjct: 283 VCYNCQQPGHNSRDCPE 299
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 41.9 bits (94), Expect = 1e-04
Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADR------CY 302
C C GHFA +C Q V R C C + GHFA+DC+ E R C
Sbjct: 618 CRNCGIEGHFAVDCDQPKV---------PRGPCRNCGQEGHFAKDCQNERVRMEPTEPCR 668
Query: 303 RCNGTGH 323
RC GH
Sbjct: 669 RCAEEGH 675
Score = 38.3 bits (85), Expect = 0.001
Identities = 23/64 (35%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDC---KEEADRCYRCN 311
C C + GHFA +C Q V R C C GHFA DC K C C
Sbjct: 595 CRNCEQLGHFASDCDQPRV---------PRGPCRNCGIEGHFAVDCDQPKVPRGPCRNCG 645
Query: 312 GTGH 323
GH
Sbjct: 646 QEGH 649
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKE---EADRCYRCN 311
C+ C GH ++EC + V R C C + GHFA DC + C C
Sbjct: 572 CHNCGEEGHISKECDKPKV---------PRFPCRNCEQLGHFASDCDQPRVPRGPCRNCG 622
Query: 312 GTGH 323
GH
Sbjct: 623 IEGH 626
Score = 32.7 bits (71), Expect = 0.062
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +3
Query: 123 KMSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDC 278
K+ C C + GHFA++C V E C +C GH+ +C
Sbjct: 635 KVPRGPCRNCGQEGHFAKDCQNERVRMEPT------EPCRRCAEEGHWGYEC 680
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 41.9 bits (94), Expect = 1e-04
Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADR------CY 302
C C GHFA +C Q V R C C + GHFA+DC+ E R C
Sbjct: 618 CRNCGIEGHFAVDCDQPKV---------PRGPCRNCGQEGHFAKDCQNERVRMEPTEPCR 668
Query: 303 RCNGTGH 323
RC GH
Sbjct: 669 RCAEEGH 675
Score = 38.3 bits (85), Expect = 0.001
Identities = 23/64 (35%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDC---KEEADRCYRCN 311
C C + GHFA +C Q V R C C GHFA DC K C C
Sbjct: 595 CRNCEQLGHFASDCDQPRV---------PRGPCRNCGIEGHFAVDCDQPKVPRGPCRNCG 645
Query: 312 GTGH 323
GH
Sbjct: 646 QEGH 649
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKE---EADRCYRCN 311
C+ C GH ++EC + V R C C + GHFA DC + C C
Sbjct: 572 CHNCGEEGHISKECDKPKV---------PRFPCRNCEQLGHFASDCDQPRVPRGPCRNCG 622
Query: 312 GTGH 323
GH
Sbjct: 623 IEGH 626
Score = 32.7 bits (71), Expect = 0.062
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +3
Query: 123 KMSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDC 278
K+ C C + GHFA++C V E C +C GH+ +C
Sbjct: 635 KVPRGPCRNCGQEGHFAKDCQNERVRMEPT------EPCRRCAEEGHWGYEC 680
>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
protein R52.2 protein.
Length = 1019
Score = 32.7 bits (71), Expect = 0.062
Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Frame = +3
Query: 135 SVCYKCNRTGHFARECTQGGVGARDAGFNRQRE--KCFKCNRTGHFARDCKEEADRCYRC 308
S C C+ T H R +A + RE CF C R+GH C C C
Sbjct: 312 SPCIFCSSTSHVHRHEECPIFNTAEARIQKAREIGLCFGCLRSGHQRSKCSRPR-TCNHC 370
Query: 309 NGTGH 323
G H
Sbjct: 371 KGNHH 375
>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
K10D2.3 protein.
Length = 1425
Score = 32.3 bits (70), Expect = 0.082
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVG--ARDAGFNRQREKCFKCNRTGHFARDCKEEADR 296
C++C+R GHF C Q + AR + ++ N +G ++ +E DR
Sbjct: 1357 CHQCHRIGHFVESCPQRALAKEARKRFGSNSTNSSYRSNDSGRGFKNGEEGGDR 1410
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 174 RECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEA 290
R+C QG A +RQ C +C+R GHF C + A
Sbjct: 1344 RKCNQGS-----APTDRQ---CHQCHRIGHFVESCPQRA 1374
>AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical
protein K08D12.3b protein.
Length = 42
Score = 32.3 bits (70), Expect = 0.082
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +3
Query: 126 MSSSVCYKCNRTGHFARECTQG-GVGARDAG 215
MS CYKC + GH +R C G G R G
Sbjct: 1 MSDRNCYKCQQPGHISRNCPNGESDGGRRGG 31
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 237 CFKCNRTGHFARDCKE-EADRCYRCNGTG 320
C+KC + GH +R+C E+D R G G
Sbjct: 6 CYKCQQPGHISRNCPNGESDGGRRGGGGG 34
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 31.9 bits (69), Expect = 0.11
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 126 MSSSVCYKCNRTGHFARECTQGGV 197
+S CYKC GH+A C +G +
Sbjct: 247 LSDVTCYKCGEKGHYANRCHKGAL 270
Score = 26.2 bits (55), Expect = 5.4
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3
Query: 237 CFKCNRTGHFARDCKEEA 290
C+KC GH+A C + A
Sbjct: 252 CYKCGEKGHYANRCHKGA 269
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 31.1 bits (67), Expect = 0.19
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 231 EKCFKCNRTGHFARDCKEEADR-CYRCNGTGH 323
+KC +C ++G C + +R C+RCN GH
Sbjct: 654 QKCDECQQSGWHMASCFKLKNRACFRCNEMGH 685
Score = 31.1 bits (67), Expect = 0.19
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 177 ECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEE 287
EC Q G F + CF+CN GH A +C ++
Sbjct: 658 ECQQSGWHMASC-FKLKNRACFRCNEMGHIAWNCPKK 693
Score = 27.9 bits (59), Expect = 1.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 123 KMSSSVCYKCNRTGHFAREC 182
K+ + C++CN GH A C
Sbjct: 671 KLKNRACFRCNEMGHIAWNC 690
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 31.1 bits (67), Expect = 0.19
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 231 EKCFKCNRTGHFARDCKEEADR-CYRCNGTGH 323
+KC +C ++G C + +R C+RCN GH
Sbjct: 557 QKCDECQQSGWHMASCFKLKNRACFRCNEMGH 588
Score = 31.1 bits (67), Expect = 0.19
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 177 ECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEE 287
EC Q G F + CF+CN GH A +C ++
Sbjct: 561 ECQQSGWHMASC-FKLKNRACFRCNEMGHIAWNCPKK 596
Score = 27.9 bits (59), Expect = 1.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 123 KMSSSVCYKCNRTGHFAREC 182
K+ + C++CN GH A C
Sbjct: 574 KLKNRACFRCNEMGHIAWNC 593
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 31.1 bits (67), Expect = 0.19
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 231 EKCFKCNRTGHFARDCKEEADR-CYRCNGTGH 323
+KC +C ++G C + +R C+RCN GH
Sbjct: 568 QKCDECQQSGWHMASCFKLKNRACFRCNEMGH 599
Score = 31.1 bits (67), Expect = 0.19
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 177 ECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEE 287
EC Q G F + CF+CN GH A +C ++
Sbjct: 572 ECQQSGWHMASC-FKLKNRACFRCNEMGHIAWNCPKK 607
Score = 27.9 bits (59), Expect = 1.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 123 KMSSSVCYKCNRTGHFAREC 182
K+ + C++CN GH A C
Sbjct: 585 KLKNRACFRCNEMGHIAWNC 604
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 30.7 bits (66), Expect = 0.25
Identities = 10/29 (34%), Positives = 12/29 (41%)
Frame = +3
Query: 237 CFKCNRTGHFARDCKEEADRCYRCNGTGH 323
CF C + GH A +C C C H
Sbjct: 204 CFNCKKYGHRATECSAPQRECANCGDPNH 232
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 132 SSVCYKCNRTGHFARECTQGGVGARDAGF-NRQREKCFKCNRTG 260
S+ C+ C + GH A EC+ + G N + +C ++ G
Sbjct: 201 SNTCFNCKKYGHRATECSAPQRECANCGDPNHRANECASWSKNG 244
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 30.7 bits (66), Expect = 0.25
Identities = 10/29 (34%), Positives = 12/29 (41%)
Frame = +3
Query: 237 CFKCNRTGHFARDCKEEADRCYRCNGTGH 323
CF C + GH A +C C C H
Sbjct: 204 CFNCKKYGHRATECSAPQRECANCGDPNH 232
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 132 SSVCYKCNRTGHFARECTQGGVGARDAGF-NRQREKCFKCNRTG 260
S+ C+ C + GH A EC+ + G N + +C ++ G
Sbjct: 201 SNTCFNCKKYGHRATECSAPQRECANCGDPNHRANECASWSKNG 244
>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
protein F54G2.2 protein.
Length = 1023
Score = 29.9 bits (64), Expect = 0.44
Identities = 13/55 (23%), Positives = 23/55 (41%)
Frame = +3
Query: 132 SSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADR 296
+ +C +C + G C+ + + R +CF C GH + C + DR
Sbjct: 578 NGICAECKQVGGHEPSCS---LAPKTWKRERPPPQCFTCGEMGHISTYCPKRIDR 629
>AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical
protein F49F1.8 protein.
Length = 615
Score = 29.1 bits (62), Expect = 0.77
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 222 RQREKCFKCNRTGHFARDCKEEA 290
R + +C C GH AR+CK++A
Sbjct: 571 RFKGQCHYCKNVGHMARNCKKKA 593
Score = 29.1 bits (62), Expect = 0.77
Identities = 10/36 (27%), Positives = 14/36 (38%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKC 248
C+ C GH AR C + + G+ Q C
Sbjct: 576 CHYCKNVGHMARNCKKKAFAEKRKGYEDQARSITSC 611
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/47 (31%), Positives = 19/47 (40%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCK 281
C C H + EC DA + KC C GH ++DCK
Sbjct: 430 CSNCGSDEHKSWECP-------DAPNVTNQIKCTNCGAFGHISKDCK 469
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/47 (31%), Positives = 19/47 (40%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCK 281
C C H + EC DA + KC C GH ++DCK
Sbjct: 430 CSNCGSDEHKSWECP-------DAPNVTNQIKCTNCGAFGHISKDCK 469
>AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical
protein K02F6.1 protein.
Length = 783
Score = 27.9 bits (59), Expect = 1.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGA 203
CYKC GH +++C Q +
Sbjct: 313 CYKCKVVGHVSKDCPQSSTNS 333
Score = 26.6 bits (56), Expect = 4.1
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +3
Query: 237 CFKCNRTGHFARDCKEEA 290
C+KC GH ++DC + +
Sbjct: 313 CYKCKVVGHVSKDCPQSS 330
>Z81546-10|CAH10812.1| 674|Caenorhabditis elegans Hypothetical
protein F53A2.8c protein.
Length = 674
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 207 RGRLRHLACTRGRSAPSCCTCSIRLNSFSIRCI 109
RGRL L ++ + C C+ L FS RC+
Sbjct: 182 RGRLPVLTYFHQQTEAALCRCAQPLTGFSARCV 214
>Z81546-9|CAD45596.2| 782|Caenorhabditis elegans Hypothetical
protein F53A2.8b protein.
Length = 782
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 207 RGRLRHLACTRGRSAPSCCTCSIRLNSFSIRCI 109
RGRL L ++ + C C+ L FS RC+
Sbjct: 290 RGRLPVLTYFHQQTEAALCRCAQPLTGFSARCV 322
>Z81546-8|CAB04456.1| 676|Caenorhabditis elegans Hypothetical
protein F53A2.8a protein.
Length = 676
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 207 RGRLRHLACTRGRSAPSCCTCSIRLNSFSIRCI 109
RGRL L ++ + C C+ L FS RC+
Sbjct: 184 RGRLPVLTYFHQQTEAALCRCAQPLTGFSARCV 216
>U80955-3|AAM97944.1| 95|Caenorhabditis elegans Mlp/crp family
(muscle lim protein/cysteine-rich protein) protein 1,
isoform a protein.
Length = 95
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDC---KEEAD-RCYRC 308
C KC ++ + A E + GG + + CFKCN C EA+ C +C
Sbjct: 11 CPKCGKSVYAAEEMSAGGY--------KWHKFCFKCNMCNKLLDSCTVAPHEAELYCKQC 62
Query: 309 NG 314
+G
Sbjct: 63 HG 64
>U80955-1|AAM97945.1| 113|Caenorhabditis elegans Mlp/crp family
(muscle lim protein/cysteine-rich protein) protein 1,
isoform b protein.
Length = 113
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDC---KEEAD-RCYRC 308
C KC ++ + A E + GG + + CFKCN C EA+ C +C
Sbjct: 11 CPKCGKSVYAAEEMSAGGY--------KWHKFCFKCNMCNKLLDSCTVAPHEAELYCKQC 62
Query: 309 NG 314
+G
Sbjct: 63 HG 64
>AY313179-1|AAP79304.1| 782|Caenorhabditis elegans
myotubularin-related protein MTM-6B protein.
Length = 782
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 207 RGRLRHLACTRGRSAPSCCTCSIRLNSFSIRCI 109
RGRL L ++ + C C+ L FS RC+
Sbjct: 290 RGRLPVLTYFHQQTEAALCRCAQPLTGFSARCV 322
>AY313177-1|AAP79302.1| 676|Caenorhabditis elegans
myotubularin-related protein MTM-6A protein.
Length = 676
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 207 RGRLRHLACTRGRSAPSCCTCSIRLNSFSIRCI 109
RGRL L ++ + C C+ L FS RC+
Sbjct: 184 RGRLPVLTYFHQQTEAALCRCAQPLTGFSARCV 216
>AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical
protein Y38H6C.5 protein.
Length = 915
Score = 25.8 bits (54), Expect = 7.2
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3
Query: 141 CYKCNRTGHFAREC 182
CY C + GH A EC
Sbjct: 411 CYYCGKRGHTANEC 424
>U23513-5|AAP68948.1| 214|Caenorhabditis elegans Hypothetical
protein D2021.2b protein.
Length = 214
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 171 ARECTQGGVGARDAGFNRQREKCFKC 248
A+ C Q V +AG Q++ CF C
Sbjct: 28 AKNCHQLFVNEAEAGIQHQQKYCFTC 53
>U23513-4|AAP68947.1| 322|Caenorhabditis elegans Hypothetical
protein D2021.2a protein.
Length = 322
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 171 ARECTQGGVGARDAGFNRQREKCFKC 248
A+ C Q V +AG Q++ CF C
Sbjct: 136 AKNCHQLFVNEAEAGIQHQQKYCFTC 161
>U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical
protein B0280.5 protein.
Length = 524
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -1
Query: 186 ACTRGRSAPSCCTCSIRLNSFSIRC 112
ACT GR+ C ++ + ++RC
Sbjct: 326 ACTNGRAIVMFCPAGLKFSESTVRC 350
>DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin
proteoglycan-2 protein.
Length = 524
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -1
Query: 186 ACTRGRSAPSCCTCSIRLNSFSIRC 112
ACT GR+ C ++ + ++RC
Sbjct: 326 ACTNGRAIVMFCPAGLKFSESTVRC 350
>AF100656-5|AAF99963.2| 259|Caenorhabditis elegans Hypothetical
protein F49F1.6 protein.
Length = 259
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = -3
Query: 265 KCPVRLHL--KHFSRCRLKPASRAPTPPCVHSRAKC 164
+CP R + S L P +PTPPC S +C
Sbjct: 118 QCPKRCGVCTSGASNSTLAPPRPSPTPPCFDSGNEC 153
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = +3
Query: 174 RECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRC 299
R C Q +G GF K C+ G DC +++ +C
Sbjct: 825 RRCDQCAIGTY--GFGPSGCKKCDCDAVGSLGNDCDKQSGQC 864
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,350,952
Number of Sequences: 27780
Number of extensions: 115451
Number of successful extensions: 522
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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