Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_G22
(324 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 58 1e-09
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 57 3e-09
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 54 2e-08
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 51 2e-07
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 48 1e-06
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 47 3e-06
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 42 9e-05
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 42 9e-05
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 42 9e-05
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 42 1e-04
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 42 1e-04
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 40 5e-04
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 39 7e-04
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 39 9e-04
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 39 9e-04
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 38 0.002
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 38 0.002
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 38 0.002
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 37 0.003
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 37 0.004
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 36 0.005
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 36 0.005
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 34 0.019
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 33 0.044
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 33 0.044
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 32 0.10
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 32 0.10
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 31 0.13
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 31 0.23
At5g48030.1 68418.m05935 DNAJ heat shock protein, mitochondriall... 30 0.31
At4g17410.1 68417.m02607 expressed protein 30 0.31
At5g26820.1 68418.m03200 ferroportin-related low similarity to f... 29 0.71
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 29 0.71
At5g47430.1 68418.m05844 expressed protein 29 0.94
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 29 0.94
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ... 29 0.94
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 29 0.94
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 29 0.94
At1g26260.2 68414.m03204 basic helix-loop-helix (bHLH) family pr... 27 2.2
At1g26260.1 68414.m03203 basic helix-loop-helix (bHLH) family pr... 27 2.2
At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein... 27 2.9
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 27 2.9
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein... 27 3.8
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 26 5.0
At5g25790.1 68418.m03061 tesmin/TSO1-like CXC domain-containing ... 26 6.7
At3g31950.1 68416.m04046 hypothetical protein 26 6.7
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica... 26 6.7
At3g07750.2 68416.m00940 3' exoribonuclease family domain 1-cont... 26 6.7
At3g07750.1 68416.m00939 3' exoribonuclease family domain 1-cont... 26 6.7
At2g41570.1 68415.m05137 hypothetical protein similar to zinc fi... 26 6.7
At2g16690.1 68415.m01915 hypothetical protein similar to zinc fi... 26 6.7
At5g61190.1 68418.m07676 zinc finger protein-related contains Pf... 25 8.8
At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein... 25 8.8
At5g47390.1 68418.m05840 myb family transcription factor contain... 25 8.8
At3g60790.1 68416.m06800 F-box protein-related contains weak hit... 25 8.8
At2g28910.1 68415.m03513 CAX-interacting protein 4 (CAXIP4) cont... 25 8.8
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 25 8.8
At2g06904.1 68415.m00778 hypothetical protein 25 8.8
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 58.4 bits (135), Expect = 1e-09
Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 14/75 (18%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEA---------- 290
CY C TGHFAR+CT G G + + C+ C GH ARDC +++
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193
Query: 291 ----DRCYRCNGTGH 323
D CY C GH
Sbjct: 194 KGGNDGCYTCGDVGH 208
Score = 58.0 bits (134), Expect = 1e-09
Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 12/75 (16%)
Frame = +3
Query: 135 SVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDC------------ 278
S CY C GH +++C GG G +R E C+ C TGHFARDC
Sbjct: 100 SGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGAT 159
Query: 279 KEEADRCYRCNGTGH 323
K D CY C GH
Sbjct: 160 KGGNDGCYTCGDVGH 174
Score = 57.2 bits (132), Expect = 2e-09
Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 14/82 (17%)
Frame = +3
Query: 120 SKMSSSVCYKCNRTGHFARECTQGGVGARD--AGFNRQREKCFKCNRTGHFARDCKEE-- 287
+K + CY C GH AR+CTQ VG D + C+ C GHFARDC ++
Sbjct: 159 TKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVA 218
Query: 288 ----------ADRCYRCNGTGH 323
+ CY C G GH
Sbjct: 219 AGNVRSGGGGSGTCYSCGGVGH 240
Score = 52.0 bits (119), Expect = 9e-08
Identities = 24/56 (42%), Positives = 31/56 (55%)
Frame = +3
Query: 123 KMSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEA 290
+ S CY+C +GH AR+C Q G G G N C+KC + GHFAR+C A
Sbjct: 249 RQPSRGCYQCGGSGHLARDCDQRGSG---GGGN--DNACYKCGKEGHFARECSSVA 299
Score = 46.4 bits (105), Expect = 4e-06
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Frame = +3
Query: 132 SSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEA------- 290
S CY C GH AR+C A + C++C +GH ARDC +
Sbjct: 229 SGTCYSCGGVGHIARDC---------ATKRQPSRGCYQCGGSGHLARDCDQRGSGGGGND 279
Query: 291 DRCYRCNGTGH 323
+ CY+C GH
Sbjct: 280 NACYKCGKEGH 290
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 56.8 bits (131), Expect = 3e-09
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGAR---DAGFNRQREKCFKCNRTGHFARDCKEE-------- 287
CY C GH A++C G G R G + C+ C GHFARDC++
Sbjct: 163 CYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGG 222
Query: 288 ADRCYRCNGTGH 323
CY C G GH
Sbjct: 223 GSTCYTCGGVGH 234
Score = 55.6 bits (128), Expect = 7e-09
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 15/76 (19%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCK------------- 281
CY C GHFAR+C Q G G G C+ C GH A+DC+
Sbjct: 132 CYMCGDVGHFARDCRQSG-GGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGG 190
Query: 282 --EEADRCYRCNGTGH 323
D CY C G GH
Sbjct: 191 RGSGGDGCYMCGGVGH 206
Score = 55.2 bits (127), Expect = 1e-08
Identities = 23/50 (46%), Positives = 29/50 (58%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEA 290
CY+C TGH AR+C + G G+ G KCF C + GHFAR+C A
Sbjct: 254 CYECGGTGHLARDCDRRGSGSSGGGGG--SNKCFICGKEGHFARECTSVA 301
Score = 52.8 bits (121), Expect = 5e-08
Identities = 26/69 (37%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEE--------ADR 296
CY C GHFAR+C Q G G G C+ C GH A+ C +
Sbjct: 198 CYMCGGVGHFARDCRQNGGGNVGGG----GSTCYTCGGVGHIAKVCTSKIPSGGGGGGRA 253
Query: 297 CYRCNGTGH 323
CY C GTGH
Sbjct: 254 CYECGGTGH 262
Score = 52.4 bits (120), Expect = 7e-08
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Frame = +3
Query: 99 LNKLYI*SKMSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQRE----KCFKCNRTGHF 266
LNK S+ S C+ C GH A++C G G G +R +C+ C GHF
Sbjct: 82 LNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHF 141
Query: 267 ARDCKEEAD-----------RCYRCNGTGH 323
ARDC++ CY C GH
Sbjct: 142 ARDCRQSGGGNSGGGGGGGRPCYSCGEVGH 171
Score = 45.2 bits (102), Expect = 1e-05
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Frame = +3
Query: 135 SVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEE--------- 287
S CY C GH A+ CT + + G R C++C TGH ARDC
Sbjct: 224 STCYTCGGVGHIAKVCT-SKIPSGGGGGGR---ACYECGGTGHLARDCDRRGSGSSGGGG 279
Query: 288 -ADRCYRCNGTGH 323
+++C+ C GH
Sbjct: 280 GSNKCFICGKEGH 292
Score = 32.3 bits (70), Expect = 0.077
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 132 SSVCYKCNRTGHFARECT 185
S+ C+ C + GHFARECT
Sbjct: 281 SNKCFICGKEGHFARECT 298
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 54.0 bits (124), Expect = 2e-08
Identities = 21/49 (42%), Positives = 29/49 (59%)
Frame = +3
Query: 132 SSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDC 278
+S CY+C GHFAREC + G + C++CN +GHFAR+C
Sbjct: 324 ASECYRCGEEGHFARECPNSSSISTSHG-RESQTLCYRCNGSGHFAREC 371
Score = 50.4 bits (115), Expect = 3e-07
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 19/80 (23%)
Frame = +3
Query: 141 CYKCNRTGHFAREC-------TQGGVGARDAGFN-RQREKCFKCNRTGHFARDC------ 278
CY+C + GH C + + FN R+ +C++C GHFAR+C
Sbjct: 287 CYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGHFARECPNSSSI 346
Query: 279 -----KEEADRCYRCNGTGH 323
+E CYRCNG+GH
Sbjct: 347 STSHGRESQTLCYRCNGSGH 366
Score = 39.5 bits (88), Expect = 5e-04
Identities = 20/61 (32%), Positives = 26/61 (42%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 320
CY C GH + C ++R+ CF C H A+ C + D CY C TG
Sbjct: 168 CYSCGEQGHTSFNCPTP---------TKRRKPCFICGSLEHGAKQCSKGHD-CYICKKTG 217
Query: 321 H 323
H
Sbjct: 218 H 218
Score = 39.1 bits (87), Expect = 7e-04
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 129 SSSVCYKCNRTGHFARECTQGG-VGARDAGFNRQREKCFKCNR 254
S ++CY+CN +GHFAREC V RD + K K N+
Sbjct: 354 SQTLCYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNK 396
Score = 34.7 bits (76), Expect = 0.014
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADR------CY 302
C+ C H A++C++G C+ C +TGH A+DC ++ C
Sbjct: 191 CFICGSLEHGAKQCSKG-------------HDCYICKKTGHRAKDCPDKYKNGSKGAVCL 237
Query: 303 RCNGTGH 323
RC GH
Sbjct: 238 RCGDFGH 244
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 50.8 bits (116), Expect = 2e-07
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +3
Query: 120 SKMSSSVCYKCNRTGHFARECT-QGGVGARDAGFNRQREK---CFKCNRTGHFARDCKEE 287
S SS CYKC + GH++R+CT Q +G + C+KC + GH++RDC
Sbjct: 299 SSSSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSP 358
Query: 288 A 290
A
Sbjct: 359 A 359
Score = 50.0 bits (114), Expect = 4e-07
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 141 CYKCNRTGHFARECT-QGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEA 290
CYKC + GH+AR+CT Q G + CFKC + GH++RDC ++
Sbjct: 239 CYKCGKEGHWARDCTVQSDTGPVKS--TSAAGDCFKCGKPGHWSRDCTAQS 287
Score = 48.0 bits (109), Expect = 1e-06
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Frame = +3
Query: 120 SKMSSSVCYKCNRTGHFARECT-QGGVGARDAGFNRQRE---KCFKCNRTGHFARDC 278
S ++ C+KC + GH++R+CT Q G + G + +C+KC + GH++RDC
Sbjct: 263 STSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGECYKCGKQGHWSRDC 319
Score = 36.3 bits (80), Expect = 0.005
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 11/77 (14%)
Frame = +3
Query: 126 MSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADR--- 296
+SS Y + +F T+G A+ C+KC + GH+ARDC ++D
Sbjct: 208 VSSPTSYSVTKNSNFGDSDTRGYQNAKTG------TPCYKCGKEGHWARDCTVQSDTGPV 261
Query: 297 --------CYRCNGTGH 323
C++C GH
Sbjct: 262 KSTSAAGDCFKCGKPGH 278
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 48.4 bits (110), Expect = 1e-06
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREK------------CFKCNRTGHFARDC 278
C+KC GH AREC+QGG G G + C+ C +GHFARDC
Sbjct: 138 CFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDC 195
Score = 37.5 bits (83), Expect = 0.002
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGG 194
CY C +GHFAR+CT GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 33.5 bits (73), Expect = 0.033
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 189 GGVGARDAGFNRQREKCFKCNRTGHFARDCKE 284
GG G+ G CFKC GH AR+C +
Sbjct: 122 GGRGSGGRGGGGGDNSCFKCGEPGHMARECSQ 153
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 46.8 bits (106), Expect = 3e-06
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Frame = +3
Query: 135 SVCYKCNRTGHFARECT------QGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADR 296
++C C R GHFAR+C+ G+ A +C+ C GH A +C E
Sbjct: 55 NLCNNCKRPGHFARDCSNVSVCNNCGLPGHIAAECTAESRCWNCREPGHVASNCSNEG-I 113
Query: 297 CYRCNGTGH 323
C+ C +GH
Sbjct: 114 CHSCGKSGH 122
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +3
Query: 129 SSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRC 308
+ +C+ C ++GH AR+C+ A D C C + GH A DC + C C
Sbjct: 110 NEGICHSCGKSGHRARDCSNSDSRAGDL------RLCNNCFKQGHLAADCTND-KACKNC 162
Query: 309 NGTGH 323
+GH
Sbjct: 163 RTSGH 167
Score = 35.5 bits (78), Expect = 0.008
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +3
Query: 138 VCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADR--CYRCN 311
VC C+ +GH AR C +G D G +R R+ + +RD + + C+ C
Sbjct: 177 VCNICSISGHVARHCPKGDSNYSDRG-SRVRDGGMQRGGLSRMSRDREGVSAMIICHNCG 235
Query: 312 GTGH 323
G GH
Sbjct: 236 GRGH 239
Score = 34.3 bits (75), Expect = 0.019
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = +3
Query: 225 QREKCFKCNRTGHFARDCKEEADRCYRCNGTGH 323
Q C C R GHFARDC C C GH
Sbjct: 53 QGNLCNNCKRPGHFARDC-SNVSVCNNCGLPGH 84
Score = 27.5 bits (58), Expect = 2.2
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = +3
Query: 129 SSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRC 308
+ C C +GH AR+C R C C+ +GH AR C + D Y
Sbjct: 155 NDKACKNCRTSGHIARDC-------------RNDPVCNICSISGHVARHC-PKGDSNYSD 200
Query: 309 NGT 317
G+
Sbjct: 201 RGS 203
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 138 VCYKCNRTGHFARECTQGGVGARDAGFNR 224
+C+ C GH A EC V D GF R
Sbjct: 230 ICHNCGGRGHRAYECPSARVA--DRGFRR 256
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 41.9 bits (94), Expect = 9e-05
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYR 305
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 60 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 104
Score = 40.7 bits (91), Expect = 2e-04
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +3
Query: 159 TGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCK--EEADRCYRCNGTGH 323
T F+R +G G +CF C GH+ARDC + ++CYRC GH
Sbjct: 34 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGH 90
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAG 215
CY+C GH R C R +G
Sbjct: 82 CYRCGERGHIERNCKNSPKKLRRSG 106
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 41.9 bits (94), Expect = 9e-05
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYR 305
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 71 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 115
Score = 40.7 bits (91), Expect = 2e-04
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +3
Query: 159 TGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCK--EEADRCYRCNGTGH 323
T F+R +G G +CF C GH+ARDC + ++CYRC GH
Sbjct: 45 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGH 101
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAG 215
CY+C GH R C R +G
Sbjct: 93 CYRCGERGHIERNCKNSPKKLRRSG 117
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 41.9 bits (94), Expect = 9e-05
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYR 305
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 101 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 145
Score = 40.7 bits (91), Expect = 2e-04
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +3
Query: 159 TGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCK--EEADRCYRCNGTGH 323
T F+R +G G +CF C GH+ARDC + ++CYRC GH
Sbjct: 75 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGH 131
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAG 215
CY+C GH R C R +G
Sbjct: 123 CYRCGERGHIERNCKNSPKKLRRSG 147
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 132 SSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCK 281
S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 98 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 137
Score = 39.9 bits (89), Expect = 4e-04
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 234 KCFKCNRTGHFARDCK--EEADRCYRCNGTGH 323
+CF C GH+ARDC + ++CYRC GH
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGH 131
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 132 SSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCK 281
S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 57 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 96
Score = 39.9 bits (89), Expect = 4e-04
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 234 KCFKCNRTGHFARDCK--EEADRCYRCNGTGH 323
+CF C GH+ARDC + ++CYRC GH
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGH 90
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 39.5 bits (88), Expect = 5e-04
Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 22/70 (31%)
Frame = +3
Query: 135 SVCYKCNRTGHFARECTQ----------------------GGVGARDAGFNRQREKCFKC 248
S CYKC GH AR+C++ GG G G C+ C
Sbjct: 129 SDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSC 188
Query: 249 NRTGHFARDC 278
+GHFARDC
Sbjct: 189 GESGHFARDC 198
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = +3
Query: 189 GGVGARDAGFNRQREKCFKCNRTGHFARDCKE 284
GG G R G R C+KC GH ARDC E
Sbjct: 116 GGYGGRGGG-GRGGSDCYKCGEPGHMARDCSE 146
Score = 37.5 bits (83), Expect = 0.002
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGG 194
CY C +GHFAR+CT GG
Sbjct: 185 CYSCGESGHFARDCTSGG 202
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 39.1 bits (87), Expect = 7e-04
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 141 CYKCNRTGHFAREC-TQGGVGARDAGFNRQR 230
CY+C +GHFAREC ++GG G R +R R
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSR 128
Score = 36.3 bits (80), Expect = 0.005
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +3
Query: 189 GGVGARDAGFNRQRE--KCFKCNRTGHFARDCK 281
GG G D G R KC++C +GHFAR+C+
Sbjct: 80 GGRGGGDGGRGRGGSDLKCYECGESGHFARECR 112
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 38.7 bits (86), Expect = 9e-04
Identities = 15/23 (65%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = +3
Query: 141 CYKCNRTGHFAREC-TQGGVGAR 206
CY+C TGHFAREC +GG G R
Sbjct: 101 CYECGETGHFARECRNRGGTGRR 123
Score = 37.1 bits (82), Expect = 0.003
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 186 QGGVGARDAGFNRQREKCFKCNRTGHFARDCK 281
+GG G G KC++C TGHFAR+C+
Sbjct: 84 RGGGGGGRGGRGGSDLKCYECGETGHFARECR 115
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 38.7 bits (86), Expect = 9e-04
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 9/44 (20%)
Frame = +3
Query: 192 GVGARDAGFNRQREK---------CFKCNRTGHFARDCKEEADR 296
G RD G++R R + CFKC + GHFAR+C E+ R
Sbjct: 96 GDRGRDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSESSR 139
Score = 33.1 bits (72), Expect = 0.044
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAG 215
C+KC + GHFAREC +RD G
Sbjct: 120 CFKCGKPGHFARECP--SESSRDGG 142
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 189 GGVGARDAGFNRQREKCFKCNRTGHFARDCKEEAD 293
GG +R G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 31.9 bits (69), Expect = 0.10
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 123 KMSSSVCYKCNRTGHFARECTQGG 194
K + C+KC R GH+AR+C G
Sbjct: 111 KGTEDECFKCRRPGHWARDCPSTG 134
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 189 GGVGARDAGFNRQREKCFKCNRTGHFARDCKEEAD 293
GG +R G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 31.9 bits (69), Expect = 0.10
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 123 KMSSSVCYKCNRTGHFARECTQGG 194
K + C+KC R GH+AR+C G
Sbjct: 111 KGTEDECFKCRRPGHWARDCPSTG 134
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKE------EADRCY 302
C+ C+ H A+ C + R+ + C +C R GH ++C E E CY
Sbjct: 76 CFICHSKTHIAKLCPEKSEWERN-------KICLQCRRRGHSLKNCPEKNNESSEKKLCY 128
Query: 303 RCNGTGH 323
C TGH
Sbjct: 129 NCGDTGH 135
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Frame = +3
Query: 132 SSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEAD------ 293
+ +C +C R GH + C + + +++ C+ C TGH C +
Sbjct: 98 NKICLQCRRRGHSLKNCPEKN------NESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKF 151
Query: 294 -RCYRCNGTGH 323
C+ C G GH
Sbjct: 152 ASCFICKGQGH 162
Score = 35.1 bits (77), Expect = 0.011
Identities = 18/59 (30%), Positives = 23/59 (38%)
Frame = +3
Query: 138 VCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 314
+CY C TGH C D G + CF C GH +++C E Y G
Sbjct: 126 LCYNCGDTGHSLSHCPYP---MEDGG--TKFASCFICKGQGHISKNCPENKHGIYPMGG 179
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Frame = +3
Query: 231 EKCFKCNRTGHFARDCKEEAD-----RCYRCNGTGH 323
E CF C+ H A+ C E+++ C +C GH
Sbjct: 74 EGCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGH 109
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 37.1 bits (82), Expect = 0.003
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +3
Query: 225 QREKCFKCNRTGHFARDC 278
Q+EKCF C +TGHFA DC
Sbjct: 261 QQEKCFVCGQTGHFASDC 278
Score = 28.7 bits (61), Expect = 0.94
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDA 212
C+ C +TGHFA +C G G+ +A
Sbjct: 265 CFVCGQTGHFASDC-PGKSGSNNA 287
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 36.7 bits (81), Expect = 0.004
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 186 QGGVGARDAGFNRQRE-KCFKCNRTGHFARDC 278
+G G G R E +CFKC R GH+ARDC
Sbjct: 110 KGSFGGGGGGGGRVGEDECFKCGRVGHWARDC 141
Score = 34.7 bits (76), Expect = 0.014
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 123 KMSSSVCYKCNRTGHFARECTQ--GGVGARDAGFN 221
++ C+KC R GH+AR+C GG G GF+
Sbjct: 122 RVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFS 156
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 36.3 bits (80), Expect = 0.005
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 186 QGGVGARDAGFNRQREKCFKCNRTGHFARDCK 281
+GG G R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 35.1 bits (77), Expect = 0.011
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 126 MSSSVCYKCNRTGHFARECTQG 191
+ S CY+C GHFAREC +G
Sbjct: 86 IEDSKCYECGELGHFARECRRG 107
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 36.3 bits (80), Expect = 0.005
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 186 QGGVGARDAGFNRQREKCFKCNRTGHFARDCK 281
+GG G R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 35.1 bits (77), Expect = 0.011
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 126 MSSSVCYKCNRTGHFARECTQG 191
+ S CY+C GHFAREC +G
Sbjct: 86 IEDSKCYECGELGHFARECRRG 107
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 34.3 bits (75), Expect = 0.019
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 320
CYKC + GHFAR C V + C+ C+ GH + C + R + N G
Sbjct: 36 CYKCGKLGHFARSCHV--VTQPTTAY----ITCYFCSEEGHRSNGCPNK--RTDQVNPKG 87
Query: 321 H 323
H
Sbjct: 88 H 88
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 33.1 bits (72), Expect = 0.044
Identities = 17/54 (31%), Positives = 21/54 (38%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCY 302
CY+C + GH C G D+ CF C R GHF C C+
Sbjct: 79 CYRCGQLGHTGLAC---GRHYDDS----VSPSCFICGREGHFEHQCHNSFSVCF 125
Score = 29.1 bits (62), Expect = 0.71
Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 5/66 (7%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEAD-----RCYR 305
CY CN GH C + G C++C + GH C D C+
Sbjct: 55 CYVCNSLGHLC--CIEPG------HTQSWTVSCYRCGQLGHTGLACGRHYDDSVSPSCFI 106
Query: 306 CNGTGH 323
C GH
Sbjct: 107 CGREGH 112
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 7/40 (17%)
Frame = +3
Query: 225 QREKCFKCNRTGHFARDCKEEAD-------RCYRCNGTGH 323
+ E C +C GH CK E +CY CN GH
Sbjct: 24 EAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGH 63
Score = 28.3 bits (60), Expect = 1.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 228 REKCFKCNRTGHFARDC 278
R C++C GH ARDC
Sbjct: 194 RRLCYECKGKGHIARDC 210
Score = 27.5 bits (58), Expect = 2.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3
Query: 138 VCYKCNRTGHFAREC 182
+CY+C GH AR+C
Sbjct: 196 LCYECKGKGHIARDC 210
Score = 25.4 bits (53), Expect = 8.8
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 132 SSVCYKCNRTGHFAREC 182
S C+ C R GHF +C
Sbjct: 101 SPSCFICGREGHFEHQC 117
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 33.1 bits (72), Expect = 0.044
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 237 CFKCNRTGHFARDCKEEA 290
CFKC R GH++RDC A
Sbjct: 8 CFKCGRPGHWSRDCPSSA 25
Score = 29.1 bits (62), Expect = 0.71
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 141 CYKCNRTGHFAREC 182
C+KC R GH++R+C
Sbjct: 8 CFKCGRPGHWSRDC 21
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 31.9 bits (69), Expect = 0.10
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Frame = +3
Query: 129 SSSVCYKCNRTGHFARECTQGGVGARDAGFNR-QREKCFKCNRTGHFARDCKEEADRCYR 305
+S Y N T E GG A G + +R C++C GH + C +
Sbjct: 444 NSGDSYYMNETYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTACPIKLQNTSH 503
Query: 306 CNGT 317
N T
Sbjct: 504 TNST 507
Score = 27.9 bits (59), Expect = 1.6
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 120 SKMSSSVCYKCNRTGHFAREC 182
SK+ VCY+C GH + C
Sbjct: 390 SKVKRRVCYECGEKGHLSTAC 410
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 31.9 bits (69), Expect = 0.10
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 225 QREKCFKCNRTGHFARDCK 281
Q+E+CF C + GHFA +C+
Sbjct: 260 QQERCFLCGQMGHFASNCE 278
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 31.5 bits (68), Expect = 0.13
Identities = 16/58 (27%), Positives = 23/58 (39%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 314
C C GH R C + G + + KC C GH +R C++ C+G
Sbjct: 292 CRGCGGKGHNRRTCPKSK-SIVTKGISTRYHKCGICGERGHNSRTCRKPTGVNPSCSG 348
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Frame = +3
Query: 237 CFKCNRTGHFARDCKE---EADRCYRCNGTG 320
C C + GH C E ADR +RC G G
Sbjct: 266 CKNCGQEGHRRHYCPELGTNADRKFRCRGCG 296
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 30.7 bits (66), Expect = 0.23
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 138 VCYKCNRTGHFAREC 182
+CY+C + GH AR+C
Sbjct: 925 ICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.23
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +3
Query: 237 CFKCNRTGHFARDC--KEEAD 293
C++C + GH ARDC KE +D
Sbjct: 926 CYRCKKVGHLARDCHGKETSD 946
>At5g48030.1 68418.m05935 DNAJ heat shock protein, mitochondrially
targeted (GFA2) 99.8% identical to mitochondrially
targeted DnaJ protein GFA2 [Arabidopsis thaliana]
GI:21429604; contains Pfam profiles PF00226: DnaJ
domain, PF01556: DnaJ C terminal region, PF00684: DnaJ
central domain (4 repeats)
Length = 456
Score = 30.3 bits (65), Expect = 0.31
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Frame = +3
Query: 150 CNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTG--HFARDCKEEADRCYRCNGTG 320
C++T F E G + +REKC CN +G R C +C G G
Sbjct: 226 CSKTVTFQTEMACNTCGGQGVPPGTKREKCKACNGSGMTSLRRGMLSIQTTCQKCGGAG 284
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 30.3 bits (65), Expect = 0.31
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 138 VCYKCNRTGHFARECTQGG 194
VC++CN +GHF + C+ G
Sbjct: 120 VCHRCNVSGHFIQHCSTNG 138
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Frame = +3
Query: 189 GGVGARDAGFNRQREK----CFKCNRTGHFARDC 278
G +G R G R C +CN +GHF + C
Sbjct: 101 GRMGGRGFGMERTTPPPGYVCHRCNVSGHFIQHC 134
>At5g26820.1 68418.m03200 ferroportin-related low similarity to
ferroportin1 [Danio rerio] GI:7109245
Length = 598
Score = 29.1 bits (62), Expect = 0.71
Identities = 20/41 (48%), Positives = 21/41 (51%)
Frame = -1
Query: 234 SPAAG*SQRRGRLRHLACTRGRSAPSCCTCSIRLNSFSIRC 112
SP A S R R RS+PSC S RLNSFS RC
Sbjct: 29 SPVAFSSVRYHRFHSCRWLSLRSSPSC---SRRLNSFSSRC 66
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 29.1 bits (62), Expect = 0.71
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 135 SVCYKCNRTGHFARECTQGGVGARD 209
S CY+C GH + EC + +G R+
Sbjct: 152 SRCYECGDEGHLSYECPKNQLGPRE 176
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 28.7 bits (61), Expect = 0.94
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 138 VCYKCNRTGHFARECTQGG 194
VC++CN GHF + C G
Sbjct: 209 VCHRCNIPGHFIQHCPTNG 227
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +3
Query: 237 CFKCNRTGHFARDCKEEADRCY 302
C +CN GHF + C D Y
Sbjct: 210 CHRCNIPGHFIQHCPTNGDPNY 231
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 28.7 bits (61), Expect = 0.94
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 237 CFKCNRTGHFARDCKEEAD 293
CF C + GH RDC E D
Sbjct: 604 CFYCGKKGHCLRDCLEVTD 622
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Frame = +3
Query: 138 VCYKCNRTGHFARECTQ-GGVGARDAGFN----RQREK----CFKCNRTGHFARDC 278
+C+ C + GH R+C + RD N RE+ C +C + H+A C
Sbjct: 603 ICFYCGKKGHCLRDCLEVTDTELRDLVQNISVRNGREEASSLCIRCFQLSHWAATC 658
>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 1012
Score = 28.7 bits (61), Expect = 0.94
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 216 FNRQREKCFKCNRTGHFARDCKEEADR 296
F + KCF C + GH A DC+ + R
Sbjct: 259 FPGEEGKCFLCGQEGHRAADCEGKIKR 285
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 28.7 bits (61), Expect = 0.94
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 126 MSSSVCYKCNRTGHFAREC 182
MSS C+ C++ GH+A+ C
Sbjct: 1 MSSGDCFHCHQPGHWAKNC 19
Score = 26.2 bits (55), Expect = 5.0
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = +3
Query: 237 CFKCNRTGHFARDC 278
CF C++ GH+A++C
Sbjct: 6 CFHCHQPGHWAKNC 19
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 28.7 bits (61), Expect = 0.94
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 237 CFKCNRTGHFARDC 278
CFKC T H A+DC
Sbjct: 342 CFKCGSTDHIAKDC 355
Score = 27.5 bits (58), Expect = 2.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQG 191
C+KC T H A++C G
Sbjct: 342 CFKCGSTDHIAKDCVGG 358
>At1g26260.2 68414.m03204 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GBOF-1
GI:5923912 from [Tulipa gesneriana]
Length = 390
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 183 TQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADR 296
+ GG G DA + K F + +DC+EE D+
Sbjct: 154 SSGGNGHDDAKCGQTSSKGFSSKKRKRIGKDCEEEEDK 191
>At1g26260.1 68414.m03203 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GBOF-1
GI:5923912 from [Tulipa gesneriana]
Length = 390
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 183 TQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADR 296
+ GG G DA + K F + +DC+EE D+
Sbjct: 154 SSGGNGHDDAKCGQTSSKGFSSKKRKRIGKDCEEEEDK 191
>At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 415
Score = 27.1 bits (57), Expect = 2.9
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3
Query: 225 QREKCFKCNRTGHFARDC 278
Q CF+C + GH+ DC
Sbjct: 7 QTGDCFRCRQAGHWINDC 24
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +3
Query: 207 DAGFNRQREK-CFKCNRTGHFARDC 278
D G ++ R K CF C H AR+C
Sbjct: 77 DIGMSKARFKFCFNCGDMNHLARNC 101
>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 341
Score = 26.6 bits (56), Expect = 3.8
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 129 SSSVCYKCNRTGHFAREC 182
+ SVCY+C H+A+ C
Sbjct: 274 AKSVCYRCGMDDHWAKTC 291
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 26.2 bits (55), Expect = 5.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 237 CFKCNRTGHFARDCKEE 287
CF C ++GH A DC ++
Sbjct: 728 CFICGKSGHRATDCPDK 744
>At5g25790.1 68418.m03061 tesmin/TSO1-like CXC domain-containing
protein similar to SP|Q9Y4I5 Tesmin
(Metallothionein-like 5, testis-specific) {Homo
sapiens}; contains Pfam profile PF03638:
Tesmin/TSO1-like CXC domain
Length = 408
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Frame = -1
Query: 291 QPPPCSRAQSARSGCT*STSPAA------G*SQ-RRGRLRHLACTRGRSAPSCCTC 145
+PPPCS +S++ T T P G +Q ++ R+R+ C S + C C
Sbjct: 31 EPPPCSPVKSSQQSETEVTPPQKPPLHQFGHNQVQKNRVRYCECFASGSYCNGCNC 86
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 9/41 (21%)
Frame = +3
Query: 228 REKCFKCNRTGHFARDC---------KEEADRCYRCNGTGH 323
+ C C T H DC + +CY C G GH
Sbjct: 284 KRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGH 324
>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
domain-containing protein similar to transcriptional
activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 2055
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 214 PASRAPTPPCVHSRAKCPVLL 152
PA+R P+P C S++ PV L
Sbjct: 1014 PAARVPSPTCWCSKSDSPVFL 1034
>At3g07750.2 68416.m00940 3' exoribonuclease family domain
1-containing protein similar to SP|Q15024 Exosome
complex exonuclease RRP42 (EC 3.1.13.-) (Ribosomal RNA
processing protein 42) {Homo sapiens}; contains Pfam
profile PF01138: 3' exoribonuclease family, domain 1
Length = 286
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 120 SKMSSSVCYKCNRTGHFARECTQGGVG 200
S+MSS+V NRTGH + G G
Sbjct: 222 SQMSSAVSISVNRTGHICGLTKRSGSG 248
>At3g07750.1 68416.m00939 3' exoribonuclease family domain
1-containing protein similar to SP|Q15024 Exosome
complex exonuclease RRP42 (EC 3.1.13.-) (Ribosomal RNA
processing protein 42) {Homo sapiens}; contains Pfam
profile PF01138: 3' exoribonuclease family, domain 1
Length = 286
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 120 SKMSSSVCYKCNRTGHFARECTQGGVG 200
S+MSS+V NRTGH + G G
Sbjct: 222 SQMSSAVSISVNRTGHICGLTKRSGSG 248
>At2g41570.1 68415.m05137 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 418
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 216 FNRQREKCFKCNRTGHFARDC 278
+ R R++CF C R H DC
Sbjct: 197 YERIRKRCFLCQRLTHEKGDC 217
>At2g16690.1 68415.m01915 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 240
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 216 FNRQREKCFKCNRTGHFARDC 278
+ R R++CF C R H DC
Sbjct: 197 YERIRKRCFFCQRLTHDKADC 217
>At5g61190.1 68418.m07676 zinc finger protein-related contains Pfam
profile PF04396: Protein of unknown function DUF537,
weak hit to PF00096: Zinc finger C2H2 type
Length = 977
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 210 RRGRLRHLACTRGRSAPSCCTCSIRLNSF 124
R+ L+H + G SA +C C++ +SF
Sbjct: 227 RKNMLQHSSGATGESATTCRICNVVCDSF 255
>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 275
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 120 SKMSSSVCYKCNRTGHFAREC 182
S ++S C KC + GH+ EC
Sbjct: 93 SASAASQCQKCFQAGHWTYEC 113
Score = 25.4 bits (53), Expect = 8.8
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 234 KCFKCNRTGHFARDCKEE 287
+C KC + GH+ +CK E
Sbjct: 99 QCQKCFQAGHWTYECKNE 116
>At5g47390.1 68418.m05840 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 365
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGV 197
C CN GH +R C GV
Sbjct: 5 CSHCNHNGHNSRTCPNRGV 23
>At3g60790.1 68416.m06800 F-box protein-related contains weak hit to
Pfam PF00646: F-box domain
Length = 488
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 214 PASRAPTPPCVHSRAKCPVL 155
P+S + TPP + S A+C VL
Sbjct: 13 PSSLSSTPPLLASNARCKVL 32
>At2g28910.1 68415.m03513 CAX-interacting protein 4 (CAXIP4)
contains Pfam domain PF00098: Zinc knuckle; identical to
cDNA CAX-interacting protein 4 GI:27651998
Length = 332
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Frame = +3
Query: 201 ARDAGFNRQ--REKCFKCNRTGHFARDCK 281
AR G N R C KC R GH C+
Sbjct: 69 ARITGSNNDEARGSCKKCGRVGHLTFQCR 97
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 25.4 bits (53), Expect = 8.8
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +3
Query: 141 CYKCNRTGHFAREC 182
CY+C + GH A+ C
Sbjct: 227 CYRCKQEGHIAKIC 240
>At2g06904.1 68415.m00778 hypothetical protein
Length = 217
Score = 25.4 bits (53), Expect = 8.8
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +3
Query: 237 CFKCNRTGHFARDCK 281
CF C GH+ +DC+
Sbjct: 177 CFICGEDGHYPQDCQ 191
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,768,451
Number of Sequences: 28952
Number of extensions: 97998
Number of successful extensions: 493
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 360538848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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