Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_G21
(560 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39426| Best HMM Match : C4 (HMM E-Value=0) 179 1e-45
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 175 2e-44
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 127 7e-30
SB_5177| Best HMM Match : C4 (HMM E-Value=1.4e-32) 48 5e-06
SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.12
SB_41466| Best HMM Match : Collagen (HMM E-Value=9.2) 31 0.49
SB_10559| Best HMM Match : HAT (HMM E-Value=2) 31 0.85
SB_7057| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_42074| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_52940| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_52937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_43056| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_26852| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_43233| Best HMM Match : Caudal_act (HMM E-Value=5.7) 29 2.0
SB_36452| Best HMM Match : Collagen (HMM E-Value=0.35) 29 2.0
SB_36287| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_14703| Best HMM Match : Borrelia_orfA (HMM E-Value=0.14) 29 2.0
SB_10009| Best HMM Match : CPL (HMM E-Value=2.5) 29 2.0
SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
>SB_39426| Best HMM Match : C4 (HMM E-Value=0)
Length = 188
Score = 179 bits (436), Expect = 1e-45
Identities = 80/146 (54%), Positives = 98/146 (67%)
Frame = +1
Query: 7 YWLSTGQPIPMMPVEGNEIVKYISRCVVCEVPSNVIAVHSQTLDIPGCPVGWSELWIGYS 186
YWLST +PMMP++ + + YISRC VCE V+AVHSQ+ +P CP GWS LW GYS
Sbjct: 2 YWLSTDNQVPMMPIQASAVEPYISRCTVCESHGPVMAVHSQSTTLPTCPGGWSSLWSGYS 61
Query: 187 FVMHTXXXXXXXXXXLASPGSCLEDFRAIPFIECNGEGGTCHHFANKLSFWLTTIEDSQQ 366
F+MHT L S GSCLE FR PFIEC+G GTCH++ANK SFWL T+ +
Sbjct: 62 FLMHTGAGGSGTGQSLGSSGSCLESFRPNPFIECHGR-GTCHYYANKYSFWLATV--NTP 118
Query: 367 FAMPERQTLKSGRLLERVSRCAVCIK 444
F + +TLK+G LL RVSRC VCI+
Sbjct: 119 FQTQQSETLKAGNLLSRVSRCQVCIR 144
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 175 bits (427), Expect = 2e-44
Identities = 75/129 (58%), Positives = 95/129 (73%)
Frame = +1
Query: 61 IVKYISRCVVCEVPSNVIAVHSQTLDIPGCPVGWSELWIGYSFVMHTXXXXXXXXXXLAS 240
++ YI RC VCEV S+V+AVHSQ++ +P CP GWS LW GYSF+MHT L+S
Sbjct: 1711 LMPYIGRCAVCEVSSHVMAVHSQSITVPSCPSGWSPLWQGYSFLMHTSAGNDGSGQLLSS 1770
Query: 241 PGSCLEDFRAIPFIECNGEGGTCHHFANKLSFWLTTIEDSQQFAMPERQTLKSGRLLERV 420
PGSCLEDFRA PFIEC+G GTCH++ + SFWL T++ ++QF +P +TLK+G L ERV
Sbjct: 1771 PGSCLEDFRAHPFIECHGR-GTCHYYGSTYSFWLATVDQNKQFRIPRPETLKAGNLRERV 1829
Query: 421 SRCAVCIKN 447
SRC VC KN
Sbjct: 1830 SRCQVCQKN 1838
Score = 99 bits (238), Expect = 1e-21
Identities = 40/64 (62%), Positives = 50/64 (78%)
Frame = +1
Query: 4 SYWLSTGQPIPMMPVEGNEIVKYISRCVVCEVPSNVIAVHSQTLDIPGCPVGWSELWIGY 183
S+WLST +PIPMMPV+ + YI RC VCEV S+V+AVHSQ++ +P CP GWS LW GY
Sbjct: 1649 SFWLSTPEPIPMMPVQETNVQPYIGRCAVCEVSSHVMAVHSQSITVPSCPSGWSPLWQGY 1708
Query: 184 SFVM 195
SF+M
Sbjct: 1709 SFLM 1712
Score = 65.3 bits (152), Expect = 3e-11
Identities = 38/106 (35%), Positives = 52/106 (49%)
Frame = +1
Query: 121 HSQTLDIPGCPVGWSELWIGYSFVMHTXXXXXXXXXXLASPGSCLEDFRAIPFIECNGEG 300
HSQT+ +P CP LW GYS +++ L SPGSC++ F +PF+ CN
Sbjct: 1580 HSQTVRVPRCPEDRPPLWEGYS-LLYVQGNERAHGQDLGSPGSCIQRFSTMPFLFCNINN 1638
Query: 301 GTCHHFANKLSFWLTTIEDSQQFAMPERQTLKSGRLLERVSRCAVC 438
N SFWL+T E MP ++T + + RCAVC
Sbjct: 1639 VCNLASRNDYSFWLSTPEPIPM--MPVQET----NVQPYIGRCAVC 1678
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 127 bits (306), Expect = 7e-30
Identities = 66/147 (44%), Positives = 83/147 (56%)
Frame = +1
Query: 4 SYWLSTGQPIPMMPVEGNEIVKYISRCVVCEVPSNVIAVHSQTLDIPGCPVGWSELWIGY 183
SYWLST +PMMP++ + + YISRC VCE V+AVHS+ +
Sbjct: 1535 SYWLSTDNQVPMMPIQASAVEPYISRCTVCESHGPVMAVHSK-----------------H 1577
Query: 184 SFVMHTXXXXXXXXXXLASPGSCLEDFRAIPFIECNGEGGTCHHFANKLSFWLTTIEDSQ 363
HT L S GSCLE FR PF EC+G GTCH++ANK SFWL T+ +
Sbjct: 1578 DLTNHTGAGGSGTGQSLGSSGSCLESFRPNPFTECHGR-GTCHYYANKYSFWLATV--NT 1634
Query: 364 QFAMPERQTLKSGRLLERVSRCAVCIK 444
F + +TLK+G LL RVSRC VCI+
Sbjct: 1635 PFQTQQSETLKAGNLLSRVSRCQVCIR 1661
Score = 64.5 bits (150), Expect = 6e-11
Identities = 37/109 (33%), Positives = 55/109 (50%)
Frame = +1
Query: 112 IAVHSQTLDIPGCPVGWSELWIGYSFVMHTXXXXXXXXXXLASPGSCLEDFRAIPFIECN 291
I HSQT P CP + +LW GYS +++ L GSCL+ F +P++ CN
Sbjct: 1463 IVKHSQTTTPPECPPTYDKLWDGYS-LLYVQGHDVSHGQDLGQAGSCLKRFTTMPYLYCN 1521
Query: 292 GEGGTCHHFANKLSFWLTTIEDSQQFAMPERQTLKSGRLLERVSRCAVC 438
G + N S+WL+T D+Q MP +++ + +SRC VC
Sbjct: 1522 IFGKCNYASRNDYSYWLST--DNQVPMMP----IQASAVEPYISRCTVC 1564
>SB_5177| Best HMM Match : C4 (HMM E-Value=1.4e-32)
Length = 176
Score = 48.0 bits (109), Expect = 5e-06
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +1
Query: 112 IAVHSQTLDIPGCPVGWSELWIGYSFVMHTXXXXXXXXXXLASPGSCLEDFRAIPFIECN 291
I HSQT P CP + +LW GYS +++ L GSCL+ F +P++ CN
Sbjct: 67 IVKHSQTTTPPECPPTYDKLWDGYS-LLYVQGHDVSHGQDLGQAGSCLKRFTTMPYLYCN 125
>SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1174
Score = 33.5 bits (73), Expect = 0.12
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = +1
Query: 52 GNEIVKYISRCVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGYSFVMH 198
GN + + C VC VPS S L IP CP GWS + GY H
Sbjct: 55 GNSLQDHDVPCAVCYVPSR-----STQLMIPAVARCPAGWSREYYGYLMTEH 101
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +1
Query: 82 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 183
C VC VPS S L IP CP GWS + GY
Sbjct: 425 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 456
>SB_41466| Best HMM Match : Collagen (HMM E-Value=9.2)
Length = 288
Score = 31.5 bits (68), Expect = 0.49
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +1
Query: 82 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGYSFVMH 198
C VC VPS S L IP CP GWS + GY H
Sbjct: 151 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGYLMTSH 187
>SB_10559| Best HMM Match : HAT (HMM E-Value=2)
Length = 123
Score = 30.7 bits (66), Expect = 0.85
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 198 MHDKTVTNPQFTPSYWATWN 139
MH +++P+ TPS+W TW+
Sbjct: 23 MHASQISDPRRTPSFWKTWH 42
>SB_7057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 82 CVVCEVPSNVIAVHSQTLDIPGCPVGWSELWIGY 183
C VC VPS + + CP GWS + GY
Sbjct: 112 CAVCYVPSR--STQLMIPSVARCPTGWSREYYGY 143
>SB_42074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = +1
Query: 52 GNEIVKYISRCVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 183
G + + C VC VPS S L IP CP GWS + GY
Sbjct: 79 GKSLQNHDVPCAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 120
>SB_52940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +1
Query: 82 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 183
C VC VPS S L IP CP GWS + GY
Sbjct: 77 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 108
>SB_52937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +1
Query: 82 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 183
C VC VPS S L IP CP GWS + GY
Sbjct: 125 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 156
>SB_43056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +1
Query: 82 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 183
C VC VPS S L IP CP GWS + GY
Sbjct: 53 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 84
>SB_26852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 271
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +1
Query: 82 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 183
C VC VPS S L IP CP GWS + GY
Sbjct: 198 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 229
>SB_43233| Best HMM Match : Caudal_act (HMM E-Value=5.7)
Length = 118
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +1
Query: 82 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 183
C VC VPS S L IP CP GWS + GY
Sbjct: 65 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 96
>SB_36452| Best HMM Match : Collagen (HMM E-Value=0.35)
Length = 374
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +1
Query: 82 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 183
C VC VPS S L IP CP GWS + GY
Sbjct: 99 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 130
>SB_36287| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +1
Query: 82 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 183
C VC VPS S L IP CP GWS + GY
Sbjct: 65 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 96
>SB_14703| Best HMM Match : Borrelia_orfA (HMM E-Value=0.14)
Length = 558
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +1
Query: 82 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 183
C VC VPS S L IP CP GWS + GY
Sbjct: 84 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 115
>SB_10009| Best HMM Match : CPL (HMM E-Value=2.5)
Length = 321
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +1
Query: 82 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGYSFVMH 198
C VC V S S L IPG CP GWS + GY H
Sbjct: 225 CAVCYVSSR-----SAKLLIPGTNVCPAGWSREYHGYLMTAH 261
>SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1098
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +1
Query: 82 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 183
C VC VPS S L IP CP GWS + GY
Sbjct: 82 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 113
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +1
Query: 82 CVVCEVPSNVIAVHSQTLDIPG---CPVGWSELWIGY 183
C VC VPS S L IP CP GWS + GY
Sbjct: 701 CAVCYVPSR-----STQLMIPAVARCPAGWSREYYGY 732
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,106,245
Number of Sequences: 59808
Number of extensions: 380775
Number of successful extensions: 829
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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