Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_G20
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr...    62   3e-11
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    28   0.88 
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   1.5  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   1.5  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    26   3.5  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   8.2  
SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|...    25   8.2  

>SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 114

 Score = 62.5 bits (145), Expect = 3e-11
 Identities = 29/77 (37%), Positives = 49/77 (63%)
 Frame = +2

Query: 41  DLNEHKIVIETLRGVEGSRKCFRMVGGVLVERTVADVLPELENNCMQLPKAVQALEEQLA 220
           D +EHK+V++TL  ++ +R+CFRM+ GVLVERTV  V+P L+     +  A+  L +Q  
Sbjct: 35  DADEHKLVMDTLNSMDNNRRCFRMIHGVLVERTVGTVVPILKTTQEGIQTAMNGLLDQYK 94

Query: 221 KKGEEINKYIECHDIRI 271
           +   E  K+ + + I++
Sbjct: 95  QLEAEFQKFQKDNKIQV 111


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.9 bits (59), Expect = 0.88
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 237 LTSTLSVTTFAFSEQTALPLTTHLTSLLNP 326
           + ST+ V T A S QTA+P T H ++   P
Sbjct: 783 IASTVPVQTAAPSSQTAVPQTIHQSNAFTP 812


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +3

Query: 195 FRRSRNSLLRKARKLTSTLSVTTFAFSEQTALPLTTHLTSLLNPMFWLLVVKLALF---- 362
           + ++RN        LT+ ++V     S+     +     S  +P+ WLLV  L+ +    
Sbjct: 667 YPKARNESWTNTESLTTGITVDERGNSKLIEYDIALQPVSFHHPLHWLLVYLLSFYVERD 726

Query: 363 NYKL 374
           NYKL
Sbjct: 727 NYKL 730


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 10/46 (21%), Positives = 24/46 (52%)
 Frame = +2

Query: 128 VERTVADVLPELENNCMQLPKAVQALEEQLAKKGEEINKYIECHDI 265
           +   + + LP++  +C +LP  +  + E++ +K  +  +Y  C  I
Sbjct: 243 IRSILTEPLPDISKSCPKLPHLIFKIIEKMTRKNPD-ERYTSCSGI 287


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 234 KLTSTLSVTTFAFSEQTALPLTTHLTSLLN 323
           + TST++  T + S  T +P++TH +S  N
Sbjct: 43  EFTSTITPETPSSSSSTFVPISTHTSSATN 72


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +2

Query: 86   EGSRKCFRMVGGVLVERTVADVLPE---LENNCMQLPKAVQALEEQLAKKGEEI 238
            E + + F  +  +L +R V DVLP+   L  +  Q  +A+ AL E ++++   I
Sbjct: 2004 ETAAEAFDSLQSILGDRAVDDVLPQLLKLLESENQSEQALSALREIISRRSSTI 2057


>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 19/75 (25%), Positives = 30/75 (40%)
 Frame = +3

Query: 144 LMSYRNWRTTVCNCPKPFRRSRNSLLRKARKLTSTLSVTTFAFSEQTALPLTTHLTSLLN 323
           L + RN R      P     S    L   RK+ + + +  +A     AL     +   ++
Sbjct: 61  LYAIRNNRHFESTLPSLGDGSNRDYLDSCRKVLAGMFLVHYA---NRALVSPLLMAPQVS 117

Query: 324 PMFWLLVVKLALFNY 368
           PM W + V   LFN+
Sbjct: 118 PMHWTVFVSAVLFNF 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,765,509
Number of Sequences: 5004
Number of extensions: 31234
Number of successful extensions: 92
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)