Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_G20
(493 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0365 + 18045340-18045783 72 3e-13
11_06_0122 + 20333025-20333468 71 5e-13
06_02_0231 - 13286918-13287388 33 0.16
07_01_1046 - 9138000-9138293,9139550-9139714,9139862-9140010,914... 29 2.0
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69... 29 2.0
04_01_0034 - 401208-402923 29 2.0
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 29 2.7
01_06_1052 + 34129126-34130490 29 2.7
10_08_0543 - 18649894-18650233,18651446-18651981 27 6.2
06_03_0475 - 21217253-21217639,21217717-21218757 27 6.2
04_04_1588 - 34633057-34633824 27 6.2
03_03_0048 + 14065317-14065433,14065646-14065726,14066566-140669... 27 6.2
12_01_0864 - 8205371-8205913,8206304-8206452,8206677-8206737,820... 27 8.2
11_04_0454 - 17895935-17896093,17896878-17896911,17897114-178972... 27 8.2
11_01_0561 - 4418452-4418658,4420168-4420509 27 8.2
07_03_1108 - 24034163-24034816,24034914-24035273,24035367-24035909 27 8.2
05_02_0044 + 5968289-5968448,5968551-5968687 27 8.2
03_05_0337 - 23272845-23273271,23273318-23273526,23275615-23276298 27 8.2
03_03_0198 + 15361048-15361746,15361854-15361946,15362035-153621... 27 8.2
03_02_0236 + 6666104-6666202,6666530-6666832,6667476-6667550,666... 27 8.2
>12_02_0365 + 18045340-18045783
Length = 147
Score = 71.7 bits (168), Expect = 3e-13
Identities = 33/78 (42%), Positives = 53/78 (67%)
Frame = +2
Query: 38 MDLNEHKIVIETLRGVEGSRKCFRMVGGVLVERTVADVLPELENNCMQLPKAVQALEEQL 217
M+++EH +VI + ++ SR+C+RM+GGVLVERT+ +VLP ++ N L + V + E L
Sbjct: 41 MEVSEHSLVIGAIEPLDPSRRCYRMIGGVLVERTIKEVLPAVQRNKEGLEEVVARMNEAL 100
Query: 218 AKKGEEINKYIECHDIRI 271
KK +EI ++ + IRI
Sbjct: 101 EKKKKEITEFELKYKIRI 118
>11_06_0122 + 20333025-20333468
Length = 147
Score = 70.9 bits (166), Expect = 5e-13
Identities = 33/78 (42%), Positives = 52/78 (66%)
Frame = +2
Query: 38 MDLNEHKIVIETLRGVEGSRKCFRMVGGVLVERTVADVLPELENNCMQLPKAVQALEEQL 217
M+++EH +VI + ++ SR+C+RMVGGVLVERT+ +VLP + N L + + + E L
Sbjct: 41 MEVSEHSLVIGAIEPLDHSRRCYRMVGGVLVERTIREVLPAVHRNKEGLEEVIARMHEAL 100
Query: 218 AKKGEEINKYIECHDIRI 271
KK +EI ++ + IRI
Sbjct: 101 EKKKKEITEFELKYKIRI 118
>06_02_0231 - 13286918-13287388
Length = 156
Score = 32.7 bits (71), Expect = 0.16
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = -3
Query: 164 PVPVGHQLRCALPVRRPPCGSTFESPPPRAMSRSQFCARLDPCNSDILLPICL 6
P GH RC L RPP S + PR S + P +SD++ P+ +
Sbjct: 36 PRVAGHAARCLLLRLRPPLTSAGRNGQPRCSSLQYPNGLVPPSHSDLVAPVLI 88
>07_01_1046 -
9138000-9138293,9139550-9139714,9139862-9140010,
9140363-9140510,9140659-9140727,9140827-9141087,
9141498-9141692,9142932-9143048,9143701-9144477
Length = 724
Score = 29.1 bits (62), Expect = 2.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 469 DSCFSSYLHILADAHHIIYYINTS 398
+ C+ H +A+AHH+IY I S
Sbjct: 229 NKCWEDICHAIAEAHHLIYIIGWS 252
>04_01_0069 -
697811-697876,697956-698166,698265-698359,698448-698513,
698595-698643,698720-698770,698856-698908,699263-699331,
699874-699928,700011-700099,700217-700302,700376-700432,
700575-700716,701637-702032
Length = 494
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 173 SCSPVPVGHQLRCALPVRRPPCGSTFESPPPRA 75
+ SP+P+ + P R PP +T PPP A
Sbjct: 54 AASPIPIFRAAASSRPPRPPPPSTTTAPPPPAA 86
>04_01_0034 - 401208-402923
Length = 571
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -3
Query: 167 SPVPVGHQLRCALPVRRPPCGSTFESPPPRAMSRSQFCARLDPC 36
+P P Q + A P R PP + PPPRA + C R D C
Sbjct: 306 APPPPPPQQQRAKPSRPPPPPPPLD-PPPRAAAPPAKCKRPDGC 348
>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 128 VERTVADVLPELENNCMQLPKAVQALEEQLAKKGEEIN 241
+E + D L E+E N K Q LEE LA K +E+N
Sbjct: 1001 LEAQLLDALSEVEEN----KKEAQLLEENLAHKNDELN 1034
>01_06_1052 + 34129126-34130490
Length = 454
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -3
Query: 179 AYSCSPVPVGHQLRCALPVRRPPCGSTFESPPPRAMSRSQFCA 51
AYS + + H A RR +T PPP A+SRSQF A
Sbjct: 139 AYSVTSIGEYHSGPLARKPRRGGTNATAPPPPP-ALSRSQFAA 180
>10_08_0543 - 18649894-18650233,18651446-18651981
Length = 291
Score = 27.5 bits (58), Expect = 6.2
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = -3
Query: 215 AVPRAPERLWAIAYSCSPVPVGHQLRCALPVRRPPCGSTFESPPP 81
AV A LWA A S SPV V + A V + GS+ +PPP
Sbjct: 80 AVAVAVAELWAAARSASPVAVIAAVAGAAVVYK--VGSSLLAPPP 122
>06_03_0475 - 21217253-21217639,21217717-21218757
Length = 475
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 167 SPVP-VGHQLRCALPVRRPPCGSTFESPPPRAMSRSQFCARLDPCNS 30
SPV VG +L CA+P+RRP GS E A + + C++
Sbjct: 50 SPVAAVGDELACAVPLRRPQ-GSVSEEEVNAAAVAAAAAGGAESCST 95
>04_04_1588 - 34633057-34633824
Length = 255
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = -3
Query: 203 APERLWAIAYSCSPVPVGHQLRCALPVRRPPCGSTFESPPPRAMSRSQFCAR 48
AP+ + S G + + + RP + PPPR SR + C R
Sbjct: 17 APDSQQQVGKGRSTASYGEKEQLPITAPRPYAPAPLPPPPPRRRSRGRRCCR 68
>03_03_0048 +
14065317-14065433,14065646-14065726,14066566-14066967,
14067131-14067199,14067278-14067360,14067503-14067555,
14067659-14067780,14068033-14068386,14068479-14068578,
14068663-14068895
Length = 537
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 167 SPVPVGHQLRCALPVR-RPPCGSTFESPPPRAMSRSQ 60
SP P L CA P RP +T +PPP ++ ++
Sbjct: 166 SPTPRAASLACAAPTAPRPSSRTTTTAPPPPSLPATE 202
>12_01_0864 -
8205371-8205913,8206304-8206452,8206677-8206737,
8206815-8206917,8207197-8207492
Length = 383
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 41 DLNEHKIVIETLRGVEGSRKCFRMVGGVLVERTVADVLPE 160
D+N K T GV GS CF + + DV+P+
Sbjct: 94 DINHEKAETSTDGGVNGSCTCFHQSTSMYMTDLFPDVIPQ 133
>11_04_0454 -
17895935-17896093,17896878-17896911,17897114-17897252,
17897487-17897561,17897666-17897945
Length = 228
Score = 27.1 bits (57), Expect = 8.2
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +3
Query: 231 RKLTSTLSVTTFAFSEQTALPLTTHLTSLLNPMFWLLVVKLALFNYKL 374
R L S S AF TAL L TH+T L P + + V L + + L
Sbjct: 155 RPLPSLPSTGQSAFPSATALHLYTHIT--LKPSYAMYYVDLVMKRFSL 200
>11_01_0561 - 4418452-4418658,4420168-4420509
Length = 182
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 368 QTEMLVAFSTRGVYVIYDMMCICKNMQVRTKTAVNLSAFDYL 493
QT+ + F++ G Y + C C+N+++ + LS F+ L
Sbjct: 135 QTDYSIHFASDGEYSKLNTKCCCQNLRLEEDPDLLLSDFESL 176
>07_03_1108 - 24034163-24034816,24034914-24035273,24035367-24035909
Length = 518
Score = 27.1 bits (57), Expect = 8.2
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = -3
Query: 197 ERLWAIAYSCSPVPVGHQLRCALP---VRRPPCGSTFESPPPRA 75
E W+I VP G + C +P +R P G + E PPP A
Sbjct: 433 EEAWSIEEVAFNVP-GLSVDCFIPPADIRSGPVGESCELPPPAA 475
>05_02_0044 + 5968289-5968448,5968551-5968687
Length = 98
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -3
Query: 128 PVRRPPCGSTFESPPPRAMSRSQFC 54
P+ PPC ST P R R + C
Sbjct: 74 PIYLPPCASTASLHPSRGTKREKLC 98
>03_05_0337 - 23272845-23273271,23273318-23273526,23275615-23276298
Length = 439
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -3
Query: 206 RAPERLWAIAYSCSPVPVG--HQLRCALPVRRPP 111
RA R W + S VP+G + R PVRRPP
Sbjct: 61 RACRRYWTLGGSLRNVPIGGSTRKRPRPPVRRPP 94
>03_03_0198 +
15361048-15361746,15361854-15361946,15362035-15362102,
15362255-15362393,15362481-15362483
Length = 333
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -3
Query: 134 ALPVRRPPCGSTFESPPPRAMSRSQFCARLDP 39
A P RRPPC +F R + R F A L P
Sbjct: 17 AAPRRRPPCVLSFSLARDRFLRRRFFSAGLRP 48
>03_02_0236 +
6666104-6666202,6666530-6666832,6667476-6667550,
6668329-6668367,6668905-6668923,6669796-6669852,
6670432-6670559,6670644-6670712,6671116-6671201,
6671285-6671394,6672060-6672110,6672602-6672660,
6672953-6672997,6673132-6673206,6673314-6673430
Length = 443
Score = 27.1 bits (57), Expect = 8.2
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 177 CNCPKPFRRSRNSLLRKA-RKLTSTLSVTTFAFSEQTALPLTTHLTSLLNP 326
C C + R L R A R+ ++V+ FSEQ+ LP+T + + P
Sbjct: 3 CCCLRASTAPRFLLFRAAARRAPLPVAVSRKGFSEQSVLPITDMIENFQGP 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,140,666
Number of Sequences: 37544
Number of extensions: 242975
Number of successful extensions: 945
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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