Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_G20
         (493 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006661-3|AAF39891.1|  141|Caenorhabditis elegans Temporarily a...    68   3e-12
Z70312-3|CAA94385.1|  172|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z81499-2|CAB04088.1|  598|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AY494976-1|AAR87493.1|  598|Caenorhabditis elegans UNC-122 protein.    29   1.4  
Z48585-6|CAA88481.1|  284|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U41031-3|AAA82620.1|  164|Caenorhabditis elegans Hypothetical pr...    28   4.2  
U21308-15|AAB93316.2|  412|Caenorhabditis elegans Hypothetical p...    28   4.2  
AF016427-5|AAB65357.2|  273|Caenorhabditis elegans Ground-like (...    27   5.6  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    27   7.4  
AF285179-1|AAG15377.1|  706|Caenorhabditis elegans zygote defect...    27   7.4  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    27   7.4  
AF003386-12|AAB54253.2|  706|Caenorhabditis elegans Zygote defec...    27   7.4  
Z81072-5|CAB03020.1|  591|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U55364-14|AAA97979.1|  210|Caenorhabditis elegans Hypothetical p...    27   9.8  
AF016447-13|AAG24017.1|  334|Caenorhabditis elegans Serpentine r...    27   9.8  

>AC006661-3|AAF39891.1|  141|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 355 protein.
          Length = 141

 Score = 68.1 bits (159), Expect = 3e-12
 Identities = 29/70 (41%), Positives = 47/70 (67%)
 Frame = +2

Query: 62  VIETLRGVEGSRKCFRMVGGVLVERTVADVLPELENNCMQLPKAVQALEEQLAKKGEEIN 241
           V+E ++ +E  +KCFR++   LVE TV DV+P+L+NN   L    + L +QL +KG+E+N
Sbjct: 51  VLEVIKDLEPDQKCFRLISDTLVEYTVKDVIPDLQNNIANLTIVSKQLNDQLVEKGKELN 110

Query: 242 KYIECHDIRI 271
            +   H+IR+
Sbjct: 111 THKTTHNIRL 120


>Z70312-3|CAA94385.1|  172|Caenorhabditis elegans Hypothetical
           protein ZC168.5 protein.
          Length = 172

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 146 QLRCALPVRRPPCGSTFESPPP 81
           Q  C  P   PPCG  +E+PPP
Sbjct: 35  QCCCPPPPPPPPCGGGYEAPPP 56


>Z81499-2|CAB04088.1|  598|Caenorhabditis elegans Hypothetical
           protein F11C3.2 protein.
          Length = 598

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 19/46 (41%), Positives = 22/46 (47%)
 Frame = -3

Query: 290 ERGLLAECECRDTQCTC*FPRLS*QAVPRAPERLWAIAYSCSPVPV 153
           E G+L E   RD +C C FP L  Q VP     +  I     PVPV
Sbjct: 148 EHGILGE-PGRDGKCNCPFPDLYVQRVPIPGPPVIKIEEKMVPVPV 192


>AY494976-1|AAR87493.1|  598|Caenorhabditis elegans UNC-122 protein.
          Length = 598

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 19/46 (41%), Positives = 22/46 (47%)
 Frame = -3

Query: 290 ERGLLAECECRDTQCTC*FPRLS*QAVPRAPERLWAIAYSCSPVPV 153
           E G+L E   RD +C C FP L  Q VP     +  I     PVPV
Sbjct: 148 EHGILGE-PGRDGKCNCPFPDLYVQRVPIPGPPVIKIEEKMVPVPV 192


>Z48585-6|CAA88481.1|  284|Caenorhabditis elegans Hypothetical
           protein ZK673.6 protein.
          Length = 284

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = +2

Query: 128 VERTVADVLPELENNCMQLPKAVQALEEQLAKKGEEINKYI 250
           VE+T   +LP+L + C +  KAV  L+EQ  ++ + + +Y+
Sbjct: 177 VEKT--QILPDLRDQCTKYHKAVHTLDEQ-CRELDNLKEYV 214


>U41031-3|AAA82620.1|  164|Caenorhabditis elegans Hypothetical
           protein C16B8.3 protein.
          Length = 164

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 182 IAYSCSPVPVGHQLRCALPVRRPPCGSTFESPPP 81
           + Y   P PVG  +  A P  R P G+T+  PPP
Sbjct: 35  LPYGAPPPPVGAGVGYAPPPPR-PYGATYAPPPP 67


>U21308-15|AAB93316.2|  412|Caenorhabditis elegans Hypothetical
           protein ZK1290.10 protein.
          Length = 412

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +3

Query: 234 KLTSTLSVTTFAFSEQTALPLTTHL 308
           K TST S TT A    T+ P TTHL
Sbjct: 265 KTTSTYSTTTTAPVNTTSAPTTTHL 289


>AF016427-5|AAB65357.2|  273|Caenorhabditis elegans Ground-like (grd
           related) protein13 protein.
          Length = 273

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 19/71 (26%), Positives = 26/71 (36%)
 Frame = -3

Query: 269 CECRDTQCTC*FPRLS*QAVPRAPERLWAIAYSCSPVPVGHQLRCALPVRRPPCGSTFES 90
           C CR  QC C        A    P R +     C P P G Q +      +P    +F  
Sbjct: 26  CGCRPQQCGC--------AAASLPVRSY-----CPPSPCGRQFQSFPSYTQPYSPVSFRP 72

Query: 89  PPPRAMSRSQF 57
           PPP  + +  +
Sbjct: 73  PPPTIIQQQPY 83


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 209  PRAPE-RLWAIAYSCSPVPVGHQLRCALPVRRPPCGSTFESPP 84
            PR+P+ RL  +  S  P+  G +L   LP R PP GS    PP
Sbjct: 1091 PRSPDYRLKQVKISALPIH-GVELN-RLPARDPPMGSFTVCPP 1131


>AF285179-1|AAG15377.1|  706|Caenorhabditis elegans zygote
           defective-1 protein.
          Length = 706

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 53  HKIVIETLRGVEGSRKCFRMVGGVLVERTVADVLPELENNCMQLPKAV 196
           H+I   T+RG  G  +   +     V  + + +  E++N+ M+L K V
Sbjct: 409 HRIPDRTVRGRNGEEELITLTNNPFVYTSYSQMPKEVQNDYMRLQKMV 456


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 209  PRAPE-RLWAIAYSCSPVPVGHQLRCALPVRRPPCGSTFESPP 84
            PR+P+ RL  +  S  P+  G +L   LP R PP GS    PP
Sbjct: 1091 PRSPDYRLKQVKISALPIH-GVELN-RLPARDPPMGSFTVCPP 1131


>AF003386-12|AAB54253.2|  706|Caenorhabditis elegans Zygote
           defective: embryonic lethalprotein 1 protein.
          Length = 706

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 53  HKIVIETLRGVEGSRKCFRMVGGVLVERTVADVLPELENNCMQLPKAV 196
           H+I   T+RG  G  +   +     V  + + +  E++N+ M+L K V
Sbjct: 409 HRIPDRTVRGRNGEEELITLTNNPFVYTSYSQMPKEVQNDYMRLQKMV 456


>Z81072-5|CAB03020.1|  591|Caenorhabditis elegans Hypothetical
           protein F30A10.6 protein.
          Length = 591

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 17/61 (27%), Positives = 32/61 (52%)
 Frame = +2

Query: 2   NRGRSGAKYQSCMDLNEHKIVIETLRGVEGSRKCFRMVGGVLVERTVADVLPELENNCMQ 181
           +R + G    +CMD  +   V++++   E   +  RM+G +  E+ V D+ P LE+   Q
Sbjct: 389 SRFQRGFFRTNCMDCLDRTNVVQSMLARESLTEQLRMLGILYSEQKVQDI-PLLEDAFKQ 447

Query: 182 L 184
           +
Sbjct: 448 M 448


>U55364-14|AAA97979.1|  210|Caenorhabditis elegans Hypothetical
           protein F21C10.1 protein.
          Length = 210

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +3

Query: 150 SYRNWRTTVCNCPKPFRRSRNSLLRKARKLTSTLSVTTFAFSEQTALPLTTHLTSLLN 323
           S  NW  +  N  +P +RS  S+          LS T+F++SE+T + + T   + LN
Sbjct: 23  SVGNWAKSSTNSKEP-QRSNLSIDFCKHVFHGPLSKTSFSYSEETKMYVITSPDNPLN 79


>AF016447-13|AAG24017.1|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein268 protein.
          Length = 334

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +3

Query: 201 RSRNSLLRKARKLTSTLSVTTFAFSEQTALPLTTHLTSLLNPMFWLLVVKLA 356
           R  + L + AR   STL +    F     + ++ ++TS+  P+FW +V  LA
Sbjct: 213 RGMSKLKQTARFSKSTLKMQR-NFLNAIYIQVSVYITSIQLPIFWFIVSILA 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,173,798
Number of Sequences: 27780
Number of extensions: 197107
Number of successful extensions: 691
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)