Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_G20
         (493 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22480.2 68416.m02842 prefoldin-related KE2 family protein si...    74   6e-14
At3g22480.1 68416.m02841 prefoldin-related KE2 family protein si...    74   6e-14
At2g07505.1 68415.m00868 hypothetical protein  and genefinder          30   0.74 
At1g72010.1 68414.m08324 TCP family transcription factor, putati...    29   1.3  
At3g55660.1 68416.m06184 expressed protein contains Pfam profile...    28   3.9  
At2g20810.1 68415.m02448 glycosyl transferase family 8 protein c...    27   5.2  
At4g21270.1 68417.m03074 kinesin-like protein A (KATA)                 27   6.9  
At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat fam...    27   9.1  
At1g01770.1 68414.m00096 expressed protein                             27   9.1  

>At3g22480.2 68416.m02842 prefoldin-related KE2 family protein
           similar to Swiss-Prot:Q9UHV9 prefoldin subunit 2
           (Protein HSPC231) [Homo sapiens]; contains Pfam domain,
           PF01920: KE2 family protein
          Length = 148

 Score = 73.7 bits (173), Expect = 6e-14
 Identities = 34/78 (43%), Positives = 54/78 (69%)
 Frame = +2

Query: 38  MDLNEHKIVIETLRGVEGSRKCFRMVGGVLVERTVADVLPELENNCMQLPKAVQALEEQL 217
           M ++EH +VI  ++ ++ SRKCFRM+GGVLVERT+ +VLP ++ N   L + V+ L E L
Sbjct: 42  MQVSEHSLVINAIQPLDQSRKCFRMIGGVLVERTIKEVLPAVQRNKDGLEEVVRKLYETL 101

Query: 218 AKKGEEINKYIECHDIRI 271
            KK +++ ++   + IRI
Sbjct: 102 EKKKKDLTEFEAKYKIRI 119


>At3g22480.1 68416.m02841 prefoldin-related KE2 family protein
           similar to Swiss-Prot:Q9UHV9 prefoldin subunit 2
           (Protein HSPC231) [Homo sapiens]; contains Pfam domain,
           PF01920: KE2 family protein
          Length = 148

 Score = 73.7 bits (173), Expect = 6e-14
 Identities = 34/78 (43%), Positives = 54/78 (69%)
 Frame = +2

Query: 38  MDLNEHKIVIETLRGVEGSRKCFRMVGGVLVERTVADVLPELENNCMQLPKAVQALEEQL 217
           M ++EH +VI  ++ ++ SRKCFRM+GGVLVERT+ +VLP ++ N   L + V+ L E L
Sbjct: 42  MQVSEHSLVINAIQPLDQSRKCFRMIGGVLVERTIKEVLPAVQRNKDGLEEVVRKLYETL 101

Query: 218 AKKGEEINKYIECHDIRI 271
            KK +++ ++   + IRI
Sbjct: 102 EKKKKDLTEFEAKYKIRI 119


>At2g07505.1 68415.m00868 hypothetical protein  and genefinder
          Length = 143

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +2

Query: 89  GSRKCFRMVGGVLVERTVADVLP---ELENNCMQLPKAVQALEEQL 217
           GS   FR+   V+VE  + D+LP   ELE   + L K +QALE ++
Sbjct: 43  GSGHLFRLTDEVMVEE-MEDILPKIDELEGASLTLQKGLQALEFEM 87


>At1g72010.1 68414.m08324 TCP family transcription factor, putative
           PCF2 (GP:2580440) [Oryza sativa]
          Length = 375

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 165 SSSGRTSATVRSTSTPPTMRKHFREPSTPRNVSITILCSFRSMQL 31
           +SSG   A V+S    PT  +H +     R + +  +C+ R  QL
Sbjct: 46  TSSGSALAVVKSAVKKPTKDRHTKVDGRGRRIRMPAMCAARVFQL 90


>At3g55660.1 68416.m06184 expressed protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 579

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -2

Query: 165 SSSGRTSATVRSTSTPPT 112
           SSSGR+S   RS S+PPT
Sbjct: 47  SSSGRSSVAERSVSSPPT 64


>At2g20810.1 68415.m02448 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 536

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +2

Query: 176 MQLPKAVQALEEQLAKKGEEINKY 247
           M+L  ++QALEEQ++   E+ +KY
Sbjct: 157 MRLKASIQALEEQMSSVSEKSSKY 180


>At4g21270.1 68417.m03074 kinesin-like protein A (KATA)
          Length = 793

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 158 ELENNCMQLPKAVQALEEQLAKKGEEINKYIECH 259
           EL+    +L + V +L E+LAK+       IECH
Sbjct: 147 ELQATISKLEENVVSLHEKLAKEESSTQDAIECH 180


>At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat family
           protein contains G-protein beta WD-40 repeats
          Length = 539

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 466 SCFSSYLHILADAHH 422
           SC S+YLH LA  HH
Sbjct: 92  SCVSTYLHRLASEHH 106


>At1g01770.1 68414.m00096 expressed protein
          Length = 632

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 136 HRS*CPTGTGEQLYAIAQSRSGARG 210
           H S  P+G    LY++A SR+G +G
Sbjct: 506 HHSPAPSGQKIPLYSVAHSRAGDKG 530


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,472,916
Number of Sequences: 28952
Number of extensions: 180461
Number of successful extensions: 801
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)