Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_G19
(419 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1445 + 26580293-26580610,26580814-26581314,26581411-265815... 39 0.001
01_06_0498 + 29810105-29810401,29811448-29812726,29813969-298142... 32 0.22
06_01_0375 + 2699179-2699264,2699697-2699786,2699913-2699991,270... 31 0.50
03_02_1023 + 13265179-13265330,13265526-13265637,13265752-132660... 29 2.0
09_01_0102 + 1582793-1582898,1582988-1583093,1584115-1584172,158... 28 3.5
08_02_1509 + 27611628-27611810,27611890-27612903,27612996-276139... 28 3.5
11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365... 27 4.6
05_03_0369 - 13136146-13136175,13136237-13136908,13136926-131370... 27 4.6
09_02_0388 - 8450728-8450836,8451114-8451229,8451618-8451827 27 6.1
04_04_1585 + 34616343-34616531,34616677-34616742,34616842-346169... 27 6.1
01_06_0157 + 27075179-27075529,27075849-27076043,27077705-270780... 27 6.1
07_03_0955 + 22867448-22868248 27 8.1
02_01_0424 - 3097245-3099377 27 8.1
>07_03_1445 +
26580293-26580610,26580814-26581314,26581411-26581508,
26581900-26581978,26582065-26582325,26582409-26582576,
26582800-26583237
Length = 620
Score = 39.1 bits (87), Expect = 0.001
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +3
Query: 132 KFIGDSNERTQNYKDFLIGLLKKHGCKKVLDGACGTGIDSMMLVDEGFN-LVSVDASDKM 308
+ +GD RT+ Y+D L+G VLD CGTGI S+ G + +++VD S KM
Sbjct: 268 EMLGDK-VRTEAYRDALLGNPSLMNGATVLDVGCGTGILSLFAAKAGASRVIAVDGSAKM 326
Query: 309 LKHALKARWEKRKNPKYDE 365
+ A + K YDE
Sbjct: 327 VSVATEV--AKSNGFLYDE 343
>01_06_0498 +
29810105-29810401,29811448-29812726,29813969-29814204,
29814327-29814968
Length = 817
Score = 31.9 bits (69), Expect = 0.22
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 204 GCKKVLDGACGTGIDSMMLVDEGFNLVSVDASDKMLKHAL 323
G + D CGTG S+ + + ++V+ DAS+ ++HA+
Sbjct: 587 GHHRAWDAGCGTGQASISIAEHYDSVVATDASEGQIRHAV 626
>06_01_0375 +
2699179-2699264,2699697-2699786,2699913-2699991,
2700816-2700893,2701290-2701338,2702183-2702232,
2702704-2702853,2703437-2703517,2703593-2703609,
2705804-2705893,2706033-2706111,2706234-2706311,
2707554-2707687,2707858-2707936,2708108-2708188,
2708263-2708400
Length = 452
Score = 30.7 bits (66), Expect = 0.50
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +3
Query: 213 KVLDGACGTGIDSMMLVDEGFNLVSVDASDKMLKHA 320
KV+D CG GI S L G + +DA DK +K A
Sbjct: 72 KVIDVGCGGGILSEPLARMGATVTGIDAVDKNIKIA 107
>03_02_1023 + 13265179-13265330,13265526-13265637,13265752-13266048,
13266361-13266623,13267637-13267847,13268420-13268590,
13268671-13268748,13269275-13269520,13269763-13271868,
13272122-13273904,13274113-13274216,13274752-13275108,
13275210-13275328,13276175-13276436,13276669-13276893,
13277075-13277214,13278087-13278159,13278431-13278532,
13278647-13279018,13279183-13279230,13279516-13279900,
13280440-13280558
Length = 2574
Score = 28.7 bits (61), Expect = 2.0
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +3
Query: 264 DEGFNLVSVDASDKMLKHALKARWEKRKNPKYDEWV 371
+EGFN+V D+ ++ + LK W WV
Sbjct: 1693 EEGFNVVVADSCQRVFVYGLKILWNLENRAAIVSWV 1728
>09_01_0102 +
1582793-1582898,1582988-1583093,1584115-1584172,
1584676-1584745,1585132-1585197,1586374-1586429,
1587992-1588078,1588819-1589139,1589827-1589946,
1590747-1590881,1591529-1591605,1591681-1591756,
1592800-1592874,1592971-1593075,1593299-1593374,
1594482-1594617,1594702-1594804,1595186-1595298,
1596907-1597111,1597173-1597301,1597403-1597517,
1597710-1597795,1599108-1599203,1599615-1599751,
1600374-1600476,1601809-1601888,1602013-1602091,
1602241-1602298,1602489-1602586,1602673-1602767,
1602861-1602918
Length = 1074
Score = 27.9 bits (59), Expect = 3.5
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 132 KFIGDSNERTQNYKDFLIGLLKKHGCKKVLDGACGTGIDSMMLVDEG 272
K + D N+R YK+F+ G+ ++ G VL+ D + ++G
Sbjct: 762 KALQDENDRRACYKEFIDGVYREVGPSNVLEKEIERVKDKLQTAEQG 808
>08_02_1509 +
27611628-27611810,27611890-27612903,27612996-27613978,
27614079-27614352
Length = 817
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 248 VNPCSASTVQHFLASVFFQKPDEEVFIILCS 156
++PCS V H +A+VFF D+ + L S
Sbjct: 645 LHPCSDRAVTHVVAAVFFGGADDREAVSLAS 675
>11_01_0471 -
3648871-3649078,3649841-3649926,3650111-3650155,
3650306-3650815,3651700-3653757
Length = 968
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -3
Query: 357 ILGFSSSPTWL*ARASTFCQKRQLKQD*NLRL 262
++ SS+PT + A A+T+CQ + D N++L
Sbjct: 268 LVSLSSAPTAVRAAANTYCQLLSSQSDNNVKL 299
>05_03_0369 -
13136146-13136175,13136237-13136908,13136926-13137016,
13137184-13137416,13137459-13137731,13137877-13138265,
13138325-13139156,13139847-13139922,13140027-13140414,
13141395-13141748,13142069-13142333,13143366-13143716
Length = 1317
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 257 HHGVNPCSASTVQHFLAS 204
HHG NP +A+T +F AS
Sbjct: 410 HHGTNPTTAATTTNFTAS 427
>09_02_0388 - 8450728-8450836,8451114-8451229,8451618-8451827
Length = 144
Score = 27.1 bits (57), Expect = 6.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 278 IETFVYQHHGVNPCSA 231
IETF+ Q G NPCS+
Sbjct: 92 IETFIVQSTGTNPCSS 107
>04_04_1585 +
34616343-34616531,34616677-34616742,34616842-34616910,
34617408-34617443,34617877-34617942,34618216-34618284,
34618394-34618471,34618674-34618752,34618866-34618960,
34619056-34619140,34619390-34619571,34619681-34619799,
34620529-34620550
Length = 384
Score = 27.1 bits (57), Expect = 6.1
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 156 RTQNYKDFLIGLLKKHGCKKVLDGACGTGIDSMMLVDEGFNLV-SVDASD 302
RT Y+ ++ K K V+D CGTGI S+ G V +V+AS+
Sbjct: 67 RTDAYRSAIMHHQKFIEGKVVMDVGCGTGILSVFCARAGAKCVYAVEASE 116
>01_06_0157 +
27075179-27075529,27075849-27076043,27077705-27078036,
27078157-27078577
Length = 432
Score = 27.1 bits (57), Expect = 6.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 99 YADGKAARAWNKFIGDSNERTQNYKDFLIGLLKKHGCKKVL 221
++DG A G+ NE T DF++ +K+G K +L
Sbjct: 95 FSDGGGGNALQLSPGNYNENTFKGLDFVLSEARKYGIKVIL 135
>07_03_0955 + 22867448-22868248
Length = 266
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 328 ALSACFNILSEASTETRLKPSSTSIMESIPVPQAP 224
+L F + AST R+ P+S ++ P P++P
Sbjct: 65 SLGLTFQLWPSASTLLRVLPASPLLLSRAPTPESP 99
>02_01_0424 - 3097245-3099377
Length = 710
Score = 26.6 bits (56), Expect = 8.1
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +3
Query: 201 HGCKKVLDGACGTGIDSMMLVDEGFNLVSVDASDKMLK 314
+G + VLDGA + +++++D GFN+ S + D + K
Sbjct: 254 NGLQGVLDGAGMIKLRNLVVLDLGFNMFSGNIPDSIGK 291
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,386,059
Number of Sequences: 37544
Number of extensions: 231311
Number of successful extensions: 682
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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