Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_G19
         (419 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   3.2  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   4.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   4.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   4.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   4.3  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   5.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.5  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    20   9.9  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    20   9.9  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    20   9.9  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 341 LLPPGFERVLQHFVRSV 291
           +LP GF +VL H V+ +
Sbjct: 68  MLPTGFRKVLVHNVKEL 84


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -2

Query: 325 LSACFNILSEASTETRLKPSSTSIMESIPVPQAPSSTFLH 206
           L  C  +    + E R +     I  +IPVPQA +   ++
Sbjct: 29  LGNCVRVSPVITIEPRRRKFHKPITLTIPVPQAANKGMIN 68


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 240 GIDSMMLVDEGFNLVSVDASDKMLK 314
           G+DS     EGF   +VD   ++L+
Sbjct: 388 GLDSQFCTVEGFITAAVDEWPRLLR 412


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 240 GIDSMMLVDEGFNLVSVDASDKMLK 314
           G+DS     EGF   +VD   ++L+
Sbjct: 441 GLDSQFCTVEGFITAAVDEWPRLLR 465


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 244 IPVPQAPSSTFLHP 203
           +PVPQ   ST L P
Sbjct: 796 VPVPQVNDSTILSP 809


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 251 GVNPCSASTVQHFL 210
           GV+ C A+ V HFL
Sbjct: 25  GVDECQATPVIHFL 38


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -2

Query: 313 FNILSEASTETRLKPSSTSIMESIPVPQAPSSTF 212
           FN  + A T T   PS      S P P +PSS F
Sbjct: 69  FNDSAAAITST--SPSYPGGGSSSPSPSSPSSFF 100


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 154 KEHKIIKTSSSGF*KNTDARK 216
           KEHKII + S+ +  N +  K
Sbjct: 77  KEHKIISSLSNNYNYNNNNYK 97


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 154 KEHKIIKTSSSGF*KNTDARK 216
           KEHKII + S+ +  N +  K
Sbjct: 77  KEHKIISSLSNNYNYNNNNYK 97


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 154 KEHKIIKTSSSGF*KNTDARK 216
           KEHKII + S+ +  N +  K
Sbjct: 77  KEHKIISSLSNNYNYNNNNYK 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,116
Number of Sequences: 438
Number of extensions: 2270
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)