Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_G18
(512 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi... 28 0.71
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha... 28 0.94
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 27 1.2
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 27 2.2
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 26 2.9
SPAC9.02c |||N-acetyltransferase|Schizosaccharomyces pombe|chr 1... 26 3.8
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 5.0
SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr... 25 5.0
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 25 6.7
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 25 6.7
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 25 6.7
SPBC31F10.09c |nut2|med10|mediator complex subunit Med10|Schizos... 25 8.8
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 25 8.8
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 25 8.8
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha... 25 8.8
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ... 25 8.8
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 8.8
>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 308
Score = 28.3 bits (60), Expect = 0.71
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -3
Query: 150 VTHSGSRRHELSQP-PGIVSRPGSPPCRSRGAPTRRCPRGEA 28
++ S S H SQ PG S P P + G ++CP EA
Sbjct: 66 ISSSSSEPHHTSQSTPGETSSPVCPVSGAHGGADKKCPALEA 107
>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 27.9 bits (59), Expect = 0.94
Identities = 31/149 (20%), Positives = 54/149 (36%), Gaps = 1/149 (0%)
Frame = +3
Query: 18 TSAGLPRGDISESEHLEN-GMAESLDERRFQEAERARVSEILNESRDAPDNEINLDDPCM 194
TS G IS E +N G+ E D E++ + E + P LDD +
Sbjct: 11 TSNGFSEEYISHPERNDNQGIVEITDLVFSSESKLTQRKESRDSKTFVPSFLEELDDDHL 70
Query: 195 KVHCSAGRVCEINEHGEAICNCIKECPYETDSRRKVCTNFNETWSSDCEVYRQRCLCLDH 374
+ G + +N GE + +++C + + + + + +Q L
Sbjct: 71 HELVTNGGILYMNSLGEGVSGSVRKC--RIRGTQMIFAMKTVLAAPNTALQKQLLRELKI 128
Query: 375 SELCRGAQYHHVQIEYYGTCREMPECSEN 461
+ C ++YYG C EC N
Sbjct: 129 NRSCTSPYI----VKYYGACYNNAECQLN 153
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 27.5 bits (58), Expect = 1.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 322 VSLKFVHTLRLESVSYGHSLMQLQIAS 242
VS +F H LRL+ V+ H + +IAS
Sbjct: 291 VSTRFSHELRLKPVAVAHGIKNSEIAS 317
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 26.6 bits (56), Expect = 2.2
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +3
Query: 9 ERPTSAGLPRGDISESEHLENGMAESLDERRFQEAERARVSEILNESRDAPDNEINLDDP 188
ERP+ A + IS+ +HL E L E A+ S +++ AP+N +N+ P
Sbjct: 286 ERPSEANVV---ISQDQHLTEDEDEELKRAIAISLEEAQKSSQKDDNVTAPNN-MNISYP 341
Query: 189 CMKVH 203
+ H
Sbjct: 342 SVPAH 346
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 374 LGAVPRGAVPPRADRVLRDLQG 439
LG V RG +P DR+L LQG
Sbjct: 476 LGHVQRGGIPCAYDRMLATLQG 497
>SPAC9.02c |||N-acetyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 165
Score = 25.8 bits (54), Expect = 3.8
Identities = 18/70 (25%), Positives = 27/70 (38%)
Frame = +3
Query: 42 DISESEHLENGMAESLDERRFQEAERARVSEILNESRDAPDNEINLDDPCMKVHCSAGRV 221
+I E E L+ F EAERA + I + + AP+ ++ L P G V
Sbjct: 3 NIRNIERSEVEEVSKLEAICFPEAERASFARIKDRVKRAPEIQLGLFAPTQHTSTLIGHV 62
Query: 222 CEINEHGEAI 251
E +
Sbjct: 63 LTSRTGSETV 72
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.4 bits (53), Expect = 5.0
Identities = 7/23 (30%), Positives = 13/23 (56%)
Frame = +3
Query: 204 CSAGRVCEINEHGEAICNCIKEC 272
C+A R+C++ E C+ +C
Sbjct: 974 CTASRICKVREIASLSLTCLLDC 996
>SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 25.4 bits (53), Expect = 5.0
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 174 NLDDPCMKVHCSAGRVCEINEHGEAICNCIKECPYETDSRRKVCTNFNE 320
NL K++ G + + HG I CIK+ + + K T FNE
Sbjct: 105 NLHKGAAKIYSMGGVIAAVC-HGPVILPCIKDSTGFSIVKGKTVTAFNE 152
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -2
Query: 187 GSSRLISLSGASRDSFRISETRALSAS 107
G+ +L +SRD+FR ++T+A S+S
Sbjct: 47 GNKKLKESQFSSRDNFRTTQTQASSSS 73
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 25.0 bits (52), Expect = 6.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 205 AAPAVSVRSTSTGKLSATASRSVHTKPTLGARCAQTSTRPG 327
++P+ + STST S+ S + T+PT G Q + G
Sbjct: 464 SSPSGTNSSTSTSSTSSKHSTGISTEPTTGEENKQDGSVGG 504
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 405 GGTAPRGTAPSGRGRGSAVGTPRSPMTRS 319
GGT G PS GSA+ P++ R+
Sbjct: 409 GGTGYTGVTPSHAANGSALAAPQATPFRT 437
>SPBC31F10.09c |nut2|med10|mediator complex subunit
Med10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 24.6 bits (51), Expect = 8.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 386 PRGAVPPRADRVLRDLQGNAGVQRERNVRLP 478
P A+P D ++RDL+ + R+ N +P
Sbjct: 34 PSDAIPESLDTLIRDLKSLPDISRKVNNLIP 64
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 24.6 bits (51), Expect = 8.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 323 GLVEVCAHLAPRVGFVWTLLDAVADS 246
G+V A +AP V +W +L+ + DS
Sbjct: 104 GMVLQWASIAPAVDAIWHILNVIDDS 129
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 24.6 bits (51), Expect = 8.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 102 IVSRPGSPPCRSRGAPTRRCPRGEAPPTSAA 10
+ SRP +P + PR ++P TSAA
Sbjct: 378 LTSRPSTPNVGNTAPDALSSPRNDSPLTSAA 408
>SPBC14F5.12c |cbh2||centromere binding protein
Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 24.6 bits (51), Expect = 8.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 78 AESLDERRFQEAERARVSEILNESRDAPDNEIN 176
A+ LDER F+ E S+ L ++DA N IN
Sbjct: 450 AQFLDEREFETDEEEEESQYLLSTKDA-INAIN 481
>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 343
Score = 24.6 bits (51), Expect = 8.8
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 10/74 (13%)
Frame = +3
Query: 276 YETDSRRKVCTNFNETWS-----SDCEVYRQRCLCLD-----HSELCRGAQYHHVQIEYY 425
+ET V TN E +S + Y + CL D H E+ R Y ++Y
Sbjct: 131 FETLPALCVATNVEELYSVVLIETPLAPYFKDCLSADDLDEQHIEIIRNTLYKAYLEDFY 190
Query: 426 GTCREMPECSENEM 467
C+++ C+ + M
Sbjct: 191 NFCKKIGACTADTM 204
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 24.6 bits (51), Expect = 8.8
Identities = 16/56 (28%), Positives = 21/56 (37%)
Frame = -3
Query: 498 ASRACAAGSLTFRSRCTPAFPCKSRSTRSARGGTAPRGTAPSGRGRGSAVGTPRSP 331
AS A S + S P S + S+RG T T P RG + +P
Sbjct: 264 ASSTIAEVSPMYGSHAAPYASTPSAAVGSSRGSTPASATVPISPARGFPTTSAYNP 319
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,085,309
Number of Sequences: 5004
Number of extensions: 42718
Number of successful extensions: 158
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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