Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_G18
(512 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 33 0.085
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 31 0.34
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 31 0.46
At3g56600.1 68416.m06294 phosphatidylinositol 3- and 4-kinase fa... 31 0.46
At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containi... 30 1.1
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 29 1.4
At3g57630.2 68416.m06421 exostosin family protein contains Pfam ... 29 1.4
At3g57630.1 68416.m06420 exostosin family protein contains Pfam ... 29 1.4
At5g01950.1 68418.m00114 leucine-rich repeat transmembrane prote... 29 2.4
At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein si... 29 2.4
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t... 29 2.4
At3g13490.1 68416.m01697 tRNA synthetase class II (D, K and N) f... 29 2.4
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 28 3.2
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 28 3.2
At3g59550.1 68416.m06646 cohesion family protein SYN3 (SYN3) nea... 28 3.2
At1g64140.1 68414.m07266 expressed protein similar to putative d... 28 3.2
At1g15190.1 68414.m01816 hypothetical protein 28 3.2
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 28 4.2
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 27 5.6
At5g09670.2 68418.m01119 loricrin-related contains weak similari... 27 5.6
At5g09670.1 68418.m01118 loricrin-related contains weak similari... 27 5.6
At3g15820.1 68416.m02002 phosphatidic acid phosphatase-related /... 27 5.6
At3g07440.1 68416.m00887 expressed protein 27 5.6
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 27 5.6
At1g26150.1 68414.m03192 protein kinase family protein similar t... 27 5.6
At5g64550.1 68418.m08112 loricrin-related contains weak similari... 27 7.4
At5g60930.1 68418.m07643 chromosome-associated kinesin, putative... 27 7.4
At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT d... 27 7.4
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 27 7.4
At4g29310.1 68417.m04190 expressed protein 27 7.4
At2g44790.1 68415.m05574 uclacyanin II strong similarity to ucla... 27 7.4
At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR... 27 9.8
At3g58860.1 68416.m06560 F-box family protein contains F-box dom... 27 9.8
At3g10650.1 68416.m01281 expressed protein 27 9.8
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 33.5 bits (73), Expect = 0.085
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -3
Query: 459 SRCTPAFPCKSRSTRSARGGTAPRGTAPSGRGRGSAVGTPRSPMTRS 319
SR P + R RGG RG GRGRG G + P+ +S
Sbjct: 223 SRRLPIHNQQGGGMRGGRGGFRARGRGNGGRGRGGGRGNGKKPVEKS 269
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 31.5 bits (68), Expect = 0.34
Identities = 40/139 (28%), Positives = 56/139 (40%), Gaps = 2/139 (1%)
Frame = -3
Query: 432 KSRST-RSARGGTAPRGTAPSGRGRGSAVGTPRSPMTRSR*SLCTPCA*SRFRMDTP*CS 256
KSRST +S+ +PR S R S + R ++ R + +P R R +P
Sbjct: 235 KSRSTSQSSDASISPRKRRLSNSRRRSRSRSVRRSLSPRRRRIHSPF---RSRSRSP--- 288
Query: 255 CR*LPRAR*SHRHGRRCS-ALSCTDRQD*FHCQEHRVTHSGSRRHELSQPPGIVSRPGSP 79
+ R R GRR S A S R + R +RR PP R +P
Sbjct: 289 ---IRRHRRPTHEGRRQSPAPSRRRRSPSPPARRRRSPSPPARRRRSPSPPARRHRSPTP 345
Query: 78 PCRSRGAPTRRCPRGEAPP 22
P R R +P+ R +PP
Sbjct: 346 PARQRRSPSPPARRHRSPP 364
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -3
Query: 153 RVTHSGSRRHELSQPPGIVSRPGSPPCRSRGAPTRRCPRGEAPPTSA 13
R + + SRR PP R SPP R R +P+ R +P A
Sbjct: 301 RQSPAPSRRRRSPSPPARRRRSPSPPARRRRSPSPPARRHRSPTPPA 347
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -3
Query: 162 QEHRVTHSGSRRHELSQPPGIVSRPGSPPCRSRGAPTRRCPRGEAP 25
++ R +RRH S PP R SPP R R +P+ R +P
Sbjct: 348 RQRRSPSPPARRHR-SPPPARRRRSPSPPARRRRSPSPPARRRRSP 392
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 135 SRRHELSQPPGIVSRPGSPPCRSRGAPTRRCPRGEAP 25
+RR PP R SPP R R +P+ R +P
Sbjct: 366 ARRRRSPSPPARRRRSPSPPARRRRSPSPLYRRNRSP 402
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 31.1 bits (67), Expect = 0.46
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 362 LPRPLGAVPRGAVPPRADRVLRDLQGNAGVQRERNVRLPAAH 487
LPRP+ P G +PP + + + G+ G+Q N ++ +H
Sbjct: 608 LPRPMQMPPHGHMPPPSMPMSHQMPGSMGMQGGMNPQMSQSH 649
>At3g56600.1 68416.m06294 phosphatidylinositol 3- and 4-kinase
family protein low similarity to 55 kDa type II
phosphatidylinositol 4-kinase [Rattus norvegicus]
GI:13660755; contains Pfam profile PF00454:
Phosphatidylinositol 3- and 4-kinase
Length = 533
Score = 31.1 bits (67), Expect = 0.46
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -2
Query: 379 SEWSRQRQRCRYTSQSDDQVSLKFVHTLRLESVSYGHSLMQLQIASPCSLIS 224
S++SR QRCR S ++ + +T + + HSL +++PC IS
Sbjct: 13 SQFSRSSQRCRLQSLTNLDFNFLGFNTKQTNLSASSHSLNNRSVSTPCFSIS 64
>At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containing
protein similar to Hsc70-interacting protein (Hip) from
{Homo sapiens} SP|P50502, {Rattus norvegicus} SP|P50503;
contains Pfam profile PF00515: tetratricopeptide repeat
(TPR) domain
Length = 441
Score = 29.9 bits (64), Expect = 1.1
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 8 GAADVGGASPRGHLRVGAPRERHGGEPGRETIPGG*E-SSCLRDPE*VTRCS 160
G +GG P G G P GG PG +PGG + S L DPE +T S
Sbjct: 349 GMPGMGGGMPAGMGGGGMPGAG-GGMPGGGGMPGGMDFSKILNDPELMTAFS 399
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 111 PPGIVSRPGSPPCRSRGAPTRRCPRGEAPPTSAAP 7
PP + PGSPP S P+ P +PPT + P
Sbjct: 536 PPSTPTSPGSPPSPSSPTPSSPIP---SPPTPSTP 567
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = -3
Query: 111 PPGIVSRPGSPPCRSRGAPTRRCPRGEAPPTSAAP 7
PP PGSPP +PT P G P + P
Sbjct: 458 PPSTTPSPGSPPT----SPTTPTPGGSPPSSPTTP 488
>At3g57630.2 68416.m06421 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 791
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +3
Query: 144 ESRDAPDNEINLDDPC-MKVHCSAGRVCEINEHGEAICNCIKECPYETDSRRKVCTNFNE 320
+ DA ++ + + C K C GR CEI C C+ +C R C
Sbjct: 240 DPEDAYAMKVKIKEECDCKYDCLWGRFCEIPVQ----CTCVNQCSGHGKCRGGFCQCDKG 295
Query: 321 TWSSDCEV 344
+ +DC +
Sbjct: 296 WFGTDCSI 303
>At3g57630.1 68416.m06420 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 793
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +3
Query: 144 ESRDAPDNEINLDDPC-MKVHCSAGRVCEINEHGEAICNCIKECPYETDSRRKVCTNFNE 320
+ DA ++ + + C K C GR CEI C C+ +C R C
Sbjct: 242 DPEDAYAMKVKIKEECDCKYDCLWGRFCEIPVQ----CTCVNQCSGHGKCRGGFCQCDKG 297
Query: 321 TWSSDCEV 344
+ +DC +
Sbjct: 298 WFGTDCSI 305
>At5g01950.1 68418.m00114 leucine-rich repeat transmembrane protein
kinase, putative receptor protein kinases
Length = 1032
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 184 SSRLISLSGASRDSFRISETRALSASWNRLSSRLSAMPFSR 62
S R SL GA D +I + L SWN L+ + + FS+
Sbjct: 334 SLRNCSLKGALPDFSKIRHLKYLDLSWNELTGPIPSSNFSK 374
>At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein
similar to lysosomal alpha-mannosidase GI:3522867 from
[Homo sapiens]
Length = 1019
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 63 LENGMAESLDERRFQEAERARVSEILNESRDAPD 164
LENG E + RR Q + V EILNE+ P+
Sbjct: 794 LENGQIELMLHRRMQHDDIRGVGEILNETVCLPE 827
>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 334
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -3
Query: 135 SRRHELSQPPGIVSRPGSPPCRSRGAPTRRCPRGEAPPTSAAP 7
++ H +PP IV P PP + PT+ P PPT+ P
Sbjct: 106 TKPHPHPKPP-IVKPPTKPPPSTPKPPTKPPPSTPKPPTTKPP 147
>At3g13490.1 68416.m01697 tRNA synthetase class II (D, K and N)
family protein similar to SP|Q9RHV9 Lysyl-tRNA
synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) {Bacillus
stearothermophilus}; contains Pfam profile: PF00152 tRNA
synthetases class II (D, K and N)
Length = 602
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 450 TPAFPCKSRSTRSARGGTAPRGTAPSGRGRGSA 352
+PA C S ++ S+ T + PSGR R SA
Sbjct: 40 SPALRCASAASSSSSSATTAETSKPSGRNRRSA 72
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = -3
Query: 426 RSTRSARGGTAPRGTAPSGRGRGSAVGTPRSPMTRS 319
RS+ ARG + RG GRG G G R P RS
Sbjct: 85 RSSHDARGSYSGRGRG--GRGGGDGGGRERGPSRRS 118
Score = 27.9 bits (59), Expect = 4.2
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -3
Query: 495 SRACAAGSLTFRSRCTPAFPCKSRS-TRSARGGTAPRGTAPSGRGRGSAVGTPRSPMTRS 319
SR+ + G +SR P +SRS +RS +P+ A S R R A T RSP +RS
Sbjct: 199 SRSPSRGRSYSKSRSRGRSPSRSRSRSRSRSKSRSPK--AKSLR-RSPAKSTSRSPRSRS 255
Query: 318 R 316
R
Sbjct: 256 R 256
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = -3
Query: 426 RSTRSARGGTAPRGTAPSGRGRGSAVGTPRSPMTRS 319
RS+ ARG + RG GRG G G R P RS
Sbjct: 85 RSSHDARGSYSGRGRG--GRGGGDGGGRERGPSRRS 118
>At3g59550.1 68416.m06646 cohesion family protein SYN3 (SYN3) nearly
identical to cohesion family protein SYN3 [Arabidopsis
thaliana] GI:12006362; supporting cDNA
gi|12006361|gb|AF281155.1|AF281155
Length = 693
Score = 28.3 bits (60), Expect = 3.2
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 3 TTERPTSAGLPRGDISESEHLENGMAESLDERRFQEAERARVSEILNESRDAPDNEINL 179
++ PT++ P GD+S SE L G L R F E + +++ +D P +I L
Sbjct: 624 SSSSPTTSSHPSGDLSLSEILA-GKTRKLAARMFFETLVLKSRGLIDMQQDRPYGDIAL 681
>At1g64140.1 68414.m07266 expressed protein similar to putative
disease resistance protein GB:CAB40943 GI:4586107 from
[Arabidopsis thaliana]; weak similarity to Loricrin
(Swiss-Prot:P23490) [Homo sapiens]
Length = 646
Score = 28.3 bits (60), Expect = 3.2
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Frame = -3
Query: 228 SHRHGRRCSALSCTD--RQD*FHCQEH----RVTHSGSRRHELSQPPGIVSRPGSPPCRS 67
SH GRRC + CT + C+ H R THSG + P G C
Sbjct: 377 SHGGGRRCQSNGCTKGAQGSTMFCKAHGGGKRCTHSGCTKGAEGSTPFCKGHGGGKRCAF 436
Query: 66 RG 61
+G
Sbjct: 437 QG 438
>At1g15190.1 68414.m01816 hypothetical protein
Length = 248
Score = 28.3 bits (60), Expect = 3.2
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = -2
Query: 193 MHGSSRLISLSGASRDSFRISETRALSASWNRLSSRLSAMPFSRCSDSEMSPRGSPA 23
+HG + L+ L+ S + + ++ AL+ S L SR S P + ++SP SP+
Sbjct: 159 VHGLADLLPLTAPSSPNRLVEDSTALAKSPWFLGSRFSPAPEPYFAFMDLSPAESPS 215
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 111 PPGIVSRPGSPPCRSRGAPTRRCPRGEAPPTSAAP 7
PP ++RPG PP S+ R APP++ P
Sbjct: 90 PPAAMARPGGPPQVSQPGGFPPVGRPVAPPSNQPP 124
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = -3
Query: 138 GSRRHELSQPPGIVSRPG----SPPCRSRGAPTRRCPRGEAPPTSAAP 7
G + ++S+PP I+ PG PP +G P P G PP P
Sbjct: 142 GMMQPQISRPPQIIRPPGQMPPQPPFAGQGGPPP--PYGMRPPYPGPP 187
>At5g09670.2 68418.m01119 loricrin-related contains weak similarity
to Loricrin (Swiss-Prot:P23490) [Homo sapiens]
Length = 546
Score = 27.5 bits (58), Expect = 5.6
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -3
Query: 228 SHRHGRRCSALSCTDRQD*FHCQEHRVTHSGSRRHELSQPPGIVSRPGSPPCRSRGAPTR 49
+H G+RC L CT + + ++H G RR E + +R S C G +
Sbjct: 199 THGGGKRCEHLGCTKSAE--GKTDFCISHGGGRRCEFLEGCDKAARGRSGLCIKHGG-GK 255
Query: 48 RC 43
RC
Sbjct: 256 RC 257
>At5g09670.1 68418.m01118 loricrin-related contains weak similarity
to Loricrin (Swiss-Prot:P23490) [Homo sapiens]
Length = 546
Score = 27.5 bits (58), Expect = 5.6
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -3
Query: 228 SHRHGRRCSALSCTDRQD*FHCQEHRVTHSGSRRHELSQPPGIVSRPGSPPCRSRGAPTR 49
+H G+RC L CT + + ++H G RR E + +R S C G +
Sbjct: 199 THGGGKRCEHLGCTKSAE--GKTDFCISHGGGRRCEFLEGCDKAARGRSGLCIKHGG-GK 255
Query: 48 RC 43
RC
Sbjct: 256 RC 257
>At3g15820.1 68416.m02002 phosphatidic acid phosphatase-related /
PAP2-related contains Pfam profile PF01569: PAP2
superfamily
Length = 301
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 54 SEHLENGMAESLDERRFQEAERARVSEILN 143
S H+ M SLD RR Q A V +ILN
Sbjct: 214 SGHVAGSMIASLDMRRMQRLRLAMVFDILN 243
>At3g07440.1 68416.m00887 expressed protein
Length = 235
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 86 ALRHAVLEVLRLGDVPAGKPRRRRPLRS 3
++RH + +RL AG+PRRR L S
Sbjct: 14 SIRHGGVSQIRLARTEAGQPRRRNKLPS 41
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -3
Query: 153 RVTHSGSRRHELSQPPGIVSRPGSPPCRSRGAPTRRCPRGEAPP 22
R + S RR PP +RP PP R+R P R PP
Sbjct: 530 RASGSRGRRPRPPLPPPARARPLPPPARARPMPPPARARPLPPP 573
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 111 PPGIVSRPGSPPCRSRGAPTRRCPRGEAPPTSAAP 7
PP P + P S PT P E+PP+ AP
Sbjct: 126 PPPPTEAPPTTPITSPSPPTNPPPPPESPPSLPAP 160
>At5g64550.1 68418.m08112 loricrin-related contains weak similarity
to Loricrin (Swiss-Prot:P23490) [Homo sapiens]
Length = 634
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +3
Query: 174 NLDDPCMKVHC---SAGRVCEINEHGEAICNCIKECP 275
N D + + C SAGR+ + H +C+ + CP
Sbjct: 21 NFGDTALSLKCLGSSAGRLIGSSHHNHKLCSDVSNCP 57
>At5g60930.1 68418.m07643 chromosome-associated kinesin, putative
microtubule-associated motor KIF4 , Mus musculus,
PIR:A54803
Length = 1294
Score = 27.1 bits (57), Expect = 7.4
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = +3
Query: 27 GLPRGDISESEHLENG----MAESLDERRFQEAERARVSEIL-NESRDAPDNEINLD 182
G ISESE LENG ++ D+ + Q+ +R + +L N D P+ E N D
Sbjct: 1100 GKENNSISESEALENGENSQESDEKDKGQQQQVLASRGAMLLQNALADKPEEETNDD 1156
>At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT
domain-containing protein contains Pfam profiles:
PF00533 BRCA1 C Terminus (BRCT) domain, PF00004 ATPase
family associated with various cellular activities (AAA)
Length = 956
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 426 RSTRSARGGTAPRGTAPSGRGRGSAVG 346
+S RGG A G + GRGRG G
Sbjct: 154 KSAGRGRGGRAAPGASTGGRGRGGGRG 180
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 117 SQPPGIVSRPGSPPCRSRGAPTRRCPRGEAPPTSAAP 7
S PP + S P PP S P P ++PP +P
Sbjct: 604 SPPPPVHSPPPPPPVYSPPPPVFSPPPSQSPPVVYSP 640
>At4g29310.1 68417.m04190 expressed protein
Length = 424
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -3
Query: 447 PAFPCKSRSTRSARGGTAPRGTAPSGRG 364
P F CK S R+ R + P G S RG
Sbjct: 186 PVFSCKFSSDRNGRSRSLPSGFTYSSRG 213
>At2g44790.1 68415.m05574 uclacyanin II strong similarity to
uclacyanin II GI:3399769 from [Arabidopsis thaliana];
contains Pfam profile PF02298: Plastocyanin-like domain;
identical to cDNA uclacyanin II GI:3399768
Length = 202
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -3
Query: 117 SQPPGIVSRPGSPPCRSRGAPTRRCPRGEAPPTSAAP 7
S PG + P SPP S G+PT P A TS P
Sbjct: 139 SSTPGTPTTPESPP--SGGSPTPTTPTPGAGSTSPPP 173
>At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1210
Score = 26.6 bits (56), Expect = 9.8
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = -2
Query: 241 PCSLISQTRP-ALQCTFMHGSSRLISLSGASRD--SFRISETRALSA-SWNRLSSRLSAM 74
PC+L + +L ++GSSRL + S + +S T S RL SRL +
Sbjct: 774 PCALPGDSNMRSLSKLLLNGSSRLKTFPEISTNIQELNLSGTAIEEVPSSIRLWSRLDKL 833
Query: 73 PFSRCSDSEMSP 38
SRC + +M P
Sbjct: 834 DMSRCKNLKMFP 845
>At3g58860.1 68416.m06560 F-box family protein contains F-box domain
Pfam:PF00646
Length = 457
Score = 26.6 bits (56), Expect = 9.8
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -2
Query: 331 DDQVSLKFVHTLRLESVSYGHSLMQLQIASPCSLISQTRPALQCTFMHGSSRLISLSGAS 152
DD + L + TL LESV +G Q + + C ++ + L M R + LS +S
Sbjct: 157 DDDMFLPMLKTLVLESVEFGRGQFQTLLPA-CPVLEE----LMLLNMEWKDRNVILSSSS 211
Query: 151 RDSFRIS 131
+ +I+
Sbjct: 212 LKNLKIT 218
>At3g10650.1 68416.m01281 expressed protein
Length = 1309
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 229 STSTGKLSATASRSVHTKPTLGARCAQTSTRPG 327
+TST K AS T GA+ A+ +RPG
Sbjct: 863 NTSTFKFGGMASADQSTGIVFGAKSAENKSRPG 895
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,672,305
Number of Sequences: 28952
Number of extensions: 258725
Number of successful extensions: 1181
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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