Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_G16
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    26   3.6  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    25   4.8  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   6.3  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   8.4  

>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = -1

Query: 430 LLSPVTLQYQTCGRTNESFNHCDYT*TISITH*NYYPESYCVIL 299
           +  P +  +  CGRT++  +      ++++ H    P  YC +L
Sbjct: 134 ITDPSSCSFSRCGRTDKGVSAMGQVISLNVRHSERRPIIYCDVL 177


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 137 VRITWKRLVSIYLSHNEFIKKTFNYFTVVIHICYLLSSIK 256
           +R+ WK+ V+ +     F    F YF V   + Y L   K
Sbjct: 192 IRVPWKKWVTRFQIVQFFADLGFIYFAVYTEVAYRLKFYK 231


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 262 PMLDRGQKITYVYYHSKIIKRFFY 191
           P  +R   I+Y+Y H  ++K+F Y
Sbjct: 681 PEEERDLLISYIYPHISVLKKFTY 704


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/51 (19%), Positives = 28/51 (54%)
 Frame = +2

Query: 125 LLPFVRITWKRLVSIYLSHNEFIKKTFNYFTVVIHICYLLSSIKHW*LKNT 277
           ++ +  I+ + L S+Y S ++++    N+  +++ +  + S  ++W L  T
Sbjct: 544 IIKYAEISVRSLNSLYESSSDYLMDVSNFPKLLLKVERIYSQARNWKLNLT 594


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,804,884
Number of Sequences: 5004
Number of extensions: 32723
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)