Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_G16
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46668-5|AAA93349.2|  569|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AF025452-7|AAB70941.2|  335|Caenorhabditis elegans Serpentine re...    27   7.6  

>U46668-5|AAA93349.2|  569|Caenorhabditis elegans Hypothetical
           protein F38E9.1 protein.
          Length = 569

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +2

Query: 302 NDTVTFWIVISMGNTYSLSIIAMIKRFICSATSLILKRYG 421
           +D+  +W  + MG  +  S +  ++ F C+    I++R+G
Sbjct: 26  HDSGAYWFNLRMGYAHDQSFLRYVRNFRCNFVKRIVERWG 65


>AF025452-7|AAB70941.2|  335|Caenorhabditis elegans Serpentine
           receptor, class i protein28 protein.
          Length = 335

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 143 ITWKRLVSIYLSHNEFIKKTFNYFTVVIHICYLLSSIKHW*LKNTVAKKK 292
           I W+  V   L+    +K T     +V+ +   LS++K    KNT+AK K
Sbjct: 192 INWRMKVFFVLTGFATLKTTVMVSFLVLRMFNALSAVKSRLSKNTIAKHK 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,817,355
Number of Sequences: 27780
Number of extensions: 177187
Number of successful extensions: 273
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)