Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_G15
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    29   0.24 
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   2.9  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   5.1  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    25   5.1  
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    25   6.7  

>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 29.5 bits (63), Expect = 0.24
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 59  SLSAAAYGVLLTTLQIAMLSARDVGTEEDIAEALLMSI 172
           SL   +YG+L+  + +  + + D+G  +D+AE LL  +
Sbjct: 508 SLDDMSYGLLVFQVNLMAIMSMDMGLSKDVAEDLLQDL 545


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 58  CPLERHFAEMKRSPKM 11
           CP+E+HF   K SPK+
Sbjct: 489 CPIEQHFIGAKGSPKI 504


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 10  TFLVIVSSPQNGALADKLIGSCVWGAVNYTSDC 108
           +FLV  S+  + ALA +L+  C+   VN+ S C
Sbjct: 499 SFLVAYSTFVSSALAVELLKFCLNSYVNFVSVC 531


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 264 TLLDFENIHGIFNQYIRIGNSGFNYKLLIFFTNC 365
           T+  F+N       YI +G     Y  L+F++ C
Sbjct: 51  TIAGFQNFFRTLGHYIYVGAYPTRYAFLVFWSFC 84


>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 77  YGVLLTTLQIAMLSARDVGTEEDIAEALL 163
           Y   LTTLQI  LS +++G    + E+ L
Sbjct: 115 YQYSLTTLQIQKLSRKEMGLAPSVIESHL 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,800,931
Number of Sequences: 5004
Number of extensions: 34806
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)