Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_G15
         (439 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    26   0.16 
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           25   0.28 
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    25   0.37 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   3.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   3.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   3.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   3.4  

>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 26.2 bits (55), Expect = 0.16
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = +1

Query: 82  GAVNYTSDCNAECKRRGYRGGHCGSFANVNCWC 180
           G VN  S C A C   G  GGHC     V C C
Sbjct: 53  GQVN-DSACAANCLSLGKAGGHC---EKVGCIC 81


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 25.4 bits (53), Expect = 0.28
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +1

Query: 82  GAVNYTSDCNAECKRRGYRGGHC 150
           G VN  S C A C   G  GGHC
Sbjct: 28  GQVN-DSACAANCHSLGKAGGHC 49


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 25.0 bits (52), Expect = 0.37
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +1

Query: 82  GAVNYTSDCNAECKRRGYRGGHC 150
           G VN  S C A C   G  GGHC
Sbjct: 53  GQVN-DSACAANCLSLGKAGGHC 74


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -1

Query: 289 WIFSKSNSV*YYWRSMLILVKFVRLYIL 206
           W+    +S  +YW   ++L+    L IL
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLLVANLIIL 106


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -1

Query: 289 WIFSKSNSV*YYWRSMLILVKFVRLYIL 206
           W+    +S  +YW   ++L+    L IL
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLLVANLIIL 106


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -1

Query: 289 WIFSKSNSV*YYWRSMLILVKFVRLYIL 206
           W+    +S  +YW   ++L+    L IL
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLLVANLIIL 106


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 188 YVSHQQLTLAKLPQCPPLYPRLLHSALQSEV*LTAPHTQ 72
           Y   QQ   A     P ++PR    A Q +  +T+P +Q
Sbjct: 204 YQQQQQSQAASQQSQPGMHPRQQQQAQQHQGVVTSPLSQ 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,112
Number of Sequences: 438
Number of extensions: 2531
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)