Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_G15
         (439 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16895.1 68416.m02160 expressed protein                             30   0.79 
At2g35420.1 68415.m04341 zinc finger (C3HC4-type RING finger) fa...    27   4.2  
At1g30640.1 68414.m03747 protein kinase, putative contains prote...    27   4.2  
At3g27325.1 68416.m03415 expressed protein                             27   7.3  
At2g02100.1 68415.m00146 plant defensin-fusion protein, putative...    26   9.7  
At1g62935.1 68414.m07106 hypothetical protein                          26   9.7  

>At3g16895.1 68416.m02160 expressed protein
          Length = 83

 Score = 29.9 bits (64), Expect = 0.79
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 12/71 (16%)
 Frame = +1

Query: 7   ITFLVIVSSPQNGALAD--KLIG----SC-VWGAVNYTSD-CNAECKRRGY-RGGHCGS- 156
           +  ++ VS P N  LA   ++ G    +C +  + +Y +D CN +C R G+ +GG CGS 
Sbjct: 12  LVIILAVSLPNNNVLASDARIEGFSFDNCNIRCSEDYWNDECNKDCLRAGFQKGGQCGSP 71

Query: 157 --FANVNCWCE 183
                V C C+
Sbjct: 72  CIPCPVKCCCQ 82


>At2g35420.1 68415.m04341 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 254

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 97  TSDCNAECKRRGYRGGHCGSF 159
           T+D N + KRR Y+ G C SF
Sbjct: 209 TTDANVKSKRRHYQTGSCVSF 229


>At1g30640.1 68414.m03747 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069
          Length = 562

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
 Frame = -3

Query: 395 YIED--KIKQ*FAVSKKY*QFVIKSRISDSDILIENAMDIFK 276
           YIE+  KI++     +K  + +++  ++D+D+ +E+ MDI K
Sbjct: 57  YIENHYKIQKKSLQERKERRSILEQNLADADVTVEDKMDILK 98


>At3g27325.1 68416.m03415 expressed protein
          Length = 1048

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = -3

Query: 137 LYPRLLHSALQSEV*LTAPHTQLPISL 57
           ++PRL  SA+Q+ + L++PH   P++L
Sbjct: 234 VHPRLRKSAVQTILTLSSPHQSPPLAL 260


>At2g02100.1 68415.m00146 plant defensin-fusion protein, putative
           (PDF2.2) plant defensin protein family member, personal
           communication, Bart Thomma
           (Bart.Thomma@agr.kuleuven.ac.be); similar to
           SWISS-PROT:O65740
          Length = 77

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 100 SDCNAECKRRGYRGGHCGSFANVNCWC 180
           S+C   C   G+ GG+C  F    C+C
Sbjct: 48  SNCANVCHNEGFVGGNCRGFRR-RCFC 73


>At1g62935.1 68414.m07106 hypothetical protein
          Length = 176

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 330 FNYKLLIFFTNCELLFYFIFD 392
           FN  LL+FF  C +LF  I D
Sbjct: 29  FNNPLLLFFFLCTILFLLIID 49


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,011,313
Number of Sequences: 28952
Number of extensions: 169595
Number of successful extensions: 359
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)