Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_G14
         (541 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   1.3  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   3.0  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   4.0  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   9.2  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 481 FKRVILYKSFKYNKIS 528
           FK+++ YK  KY K++
Sbjct: 513 FKKIVTYKGGKYRKVT 528


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 71  RRGPRARSYPRAHQA 27
           RRGP+ ++ P+A +A
Sbjct: 335 RRGPKIKTQPKAEEA 349


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 415 ERPSRKSPLAAQGAPHSI-PHY*FKRVI-LYKSFKYNKISCRKR 540
           ++ +RKS     G P  +   Y   +++ L K F +NK  CR R
Sbjct: 121 KKTTRKSSQQENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPR 164


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 496 LYKSFKYNKISCRKR 540
           L K F +NK  CR R
Sbjct: 19  LEKEFHFNKYLCRPR 33


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,350
Number of Sequences: 336
Number of extensions: 922
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13201902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)