Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_G14
         (541 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1552 - 34355544-34355613,34356099-34356282,34356829-343569...    33   0.15 
03_05_0126 + 21066911-21067321                                         32   0.34 
08_01_0876 - 8598664-8599374                                           31   0.59 
12_01_0849 + 7948693-7948996,7949829-7950610                           30   1.0  
01_01_0727 - 5675215-5675277,5675523-5675621,5676645-5676782,567...    28   4.1  
02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,850...    28   5.5  
03_02_0613 - 9848514-9848539,9848942-9849200,9849326-9849365,984...    27   7.2  

>04_04_1552 -
           34355544-34355613,34356099-34356282,34356829-34356922,
           34357006-34357124,34357623-34357689,34359185-34359265,
           34359267-34359413
          Length = 253

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = -3

Query: 161 ARTRNRRSPGCPTADPRSRRGLRARPEPPCRRGP 60
           A T +RR P  P    R R G RAR  PP R  P
Sbjct: 6   AATAHRRKPSAPRLTVRHRLGYRARLAPPVRHTP 39


>03_05_0126 + 21066911-21067321
          Length = 136

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = -3

Query: 173 HSLPARTRNRRSPGCPTADPRSRRGLRARPEPPCRRGPRARSYPRAHQAWA 21
           H + A     R PG P       RGL ++ E   RRGPR   +P  H+ W+
Sbjct: 49  HRVIACRGKLRQPGAPVR--AGARGLPSK-EQRLRRGPRLERFPVRHEKWS 96


>08_01_0876 - 8598664-8599374
          Length = 236

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 155 TRNRRSPGCPTADPRSRRGLRARPEPPCRRGPRAR 51
           T +  +P  P   P+SRRG R     P RRGPR R
Sbjct: 159 TMDGAAPLLPETSPKSRRGRRGGRRSP-RRGPRTR 192


>12_01_0849 + 7948693-7948996,7949829-7950610
          Length = 361

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 167 LPARTRNRRSPGCPTADPRSRRGLRARPEP 78
           LP R R    PG P+  P  RR  R+RP P
Sbjct: 254 LPRRRRVALHPGFPSVSPERRRLRRSRPPP 283


>01_01_0727 -
           5675215-5675277,5675523-5675621,5676645-5676782,
           5676878-5676995,5678177-5678520
          Length = 253

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -3

Query: 116 PRSRRGLRARPEPPCRRGPRARSYPRAHQAW 24
           PR+ R       P  RR PRAR  PR+ Q W
Sbjct: 35  PRAPRPEPGDGPPQERRKPRARPRPRSRQPW 65


>02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,
            8509204-8509553,8509631-8509729,8509811-8510105,
            8510200-8510405,8510498-8510689,8510766-8511163,
            8511258-8511444,8511473-8511528,8511800-8511872,
            8512012-8512872,8514353-8514778
          Length = 1134

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
 Frame = -3

Query: 158  RTRNRRSPGCPTADPRSRRGLRA-RPEPPCRRGPRARSYPRAHQAWAWLASRP 3
            RTR RR    P        G R  RP P    G  A S  R+   W  L S+P
Sbjct: 1042 RTRGRRRGPSPAIQKACWAGPRPKRPSPTSAPGGLALSVARSAPLWLALRSKP 1094


>03_02_0613 -
           9848514-9848539,9848942-9849200,9849326-9849365,
           9849952-9850117,9850228-9850756
          Length = 339

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 122 ADPRSRRGLRARPEPPCRRGPRARSYPRAH 33
           A PR++     RP PP   GP A + P  H
Sbjct: 141 AKPRAQPPHLLRPSPPATPGPHAPALPSPH 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,885,562
Number of Sequences: 37544
Number of extensions: 120781
Number of successful extensions: 514
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)