Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_G14
(541 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33538| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.34
SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2) 32 0.34
SB_5829| Best HMM Match : S4 (HMM E-Value=4.2) 31 0.60
SB_23918| Best HMM Match : rve (HMM E-Value=0.013) 29 2.4
SB_18691| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_50867| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_17889| Best HMM Match : Patched (HMM E-Value=0.14) 28 5.6
SB_2877| Best HMM Match : Hom_end (HMM E-Value=1.1) 27 7.4
SB_10386| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
>SB_33538| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 37.5 bits (83), Expect = 0.007
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -3
Query: 119 DPRSRRGLRARPEPPCRRGPRARSYPRAHQAWAWLASR 6
DPRSR R R +P R PRAR+ PR + W A +
Sbjct: 225 DPRSRNDPRTRNDPRTRNDPRARNDPRTRKDSRWFAHK 262
Score = 33.1 bits (72), Expect = 0.15
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -3
Query: 152 RNRRSPGCPTADPRSRRGLRARPEPPCRRGPRARSYPRA 36
R R P DPR+R R+R +P R PR R+ PRA
Sbjct: 209 RTRNDPWTQN-DPRTRNDPRSRNDPRTRNDPRTRNDPRA 246
Score = 31.1 bits (67), Expect = 0.60
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -3
Query: 152 RNRRSPGCPTADPRSRRGLRARPEPPCRRGPRARSYPRAHQAWAWLASRP 3
R R P DPR+R R R +P R PR R+ PR W + P
Sbjct: 173 RTRNDPRTRN-DPRTRNDPRTRNDPRTRNDPRTRNDPRTRND-PWTQNDP 220
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -3
Query: 158 RTRNR-RSPGCPTA--DPRSRRGLRARPEPPCRRGPRARSYPRA 36
RTRN R+ P DPR+R R R +P + PR R+ PR+
Sbjct: 185 RTRNDPRTRNDPRTRNDPRTRNDPRTRNDPWTQNDPRTRNDPRS 228
>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2174
Score = 31.9 bits (69), Expect = 0.34
Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 167 LPARTRNRRS-PGCPTADPRSRRGLRARPEPPCRRG 63
LP T +RR PG T PR R RP PP RG
Sbjct: 1740 LPVNTTDRRPRPGPETEPPRRSRAPPPRPPPPSSRG 1775
>SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)
Length = 939
Score = 31.9 bits (69), Expect = 0.34
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -3
Query: 152 RNRRSPGCPTADPRSRRGLRARPEPPCRRGPRARSYP 42
R R P P DPR+R R R +P R PR R+ P
Sbjct: 708 RTRNDPRTPN-DPRTRNDPRTRIDPRTRNDPRTRNDP 743
Score = 31.1 bits (67), Expect = 0.60
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -3
Query: 158 RTRN---RRSPGCPTADPRSRRGLRARPEPPCRRGPRARSYPR 39
RTRN R+ DPR+R R R +P R PR R+ PR
Sbjct: 757 RTRNDPRTRNDPWTRNDPRTRNDPRTRNDPRTRNDPRTRNDPR 799
Score = 30.7 bits (66), Expect = 0.80
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = -3
Query: 158 RTRN----RRSPGCPTADPRSRRGLRARPEPPCRRGPRARSYPR 39
RTRN + P DPR+R R R +P R PR R+ PR
Sbjct: 738 RTRNDPMTQNDPQKTRNDPRTRNDPRTRNDPWTRNDPRTRNDPR 781
Score = 30.7 bits (66), Expect = 0.80
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -3
Query: 158 RTRN---RRSPGCPTADPRSRRGLRARPEPPCRRGPRARSYPR 39
RTRN R+ DPR+R R R +P R PR R+ PR
Sbjct: 763 RTRNDPWTRNDPRTRNDPRTRNDPRTRNDPRTRNDPRTRNDPR 805
Score = 30.7 bits (66), Expect = 0.80
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -3
Query: 152 RNRRSPGCPTADPRSRRGLRARPEPPCRRGPRARSYPR 39
R R P DPR+R R R +P R PR R+ PR
Sbjct: 775 RTRNDPRTRN-DPRTRNDPRTRNDPRTRNDPRTRNDPR 811
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -3
Query: 158 RTRNR-RSPGCPTA--DPRSRRGLRARPEPPCRRGPRARSYP 42
RTRN R+ P DPR+R R R +P R PR R+ P
Sbjct: 775 RTRNDPRTRNDPRTRNDPRTRNDPRTRNDPRTRNDPRTRNDP 816
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -3
Query: 158 RTRNR-RSPGCPTA--DPRSRRGLRARPEPPCRRGPRARSYPR 39
RTRN R+ P DPR+R R R +P R P R+ PR
Sbjct: 781 RTRNDPRTRNDPRTRNDPRTRNDPRTRNDPRTRNDPSTRNDPR 823
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 119 DPRSRRGLRARPEPPCRRGPRARSYPR 39
DPR+R R R +P PR R+ PR
Sbjct: 700 DPRTRNDPRTRNDPRTPNDPRTRNDPR 726
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = -3
Query: 158 RTRNR-RSPGCPTA--DPRSRRGLRARPEPPCRRGPRARSYP 42
RTRN R+ P DPR+R R R +P R PR + P
Sbjct: 787 RTRNDPRTRNDPRTRNDPRTRNDPRTRNDPSTRNDPRTLNQP 828
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -3
Query: 158 RTRNR-RSPGCPTA--DPRSRRGLRARPEPPCRRGPRARSYPR 39
RTRN R+ P DPR+ R R +P R PR R+ PR
Sbjct: 696 RTRNDPRTRNDPRTRNDPRTPNDPRTRNDPRTRIDPRTRNDPR 738
>SB_5829| Best HMM Match : S4 (HMM E-Value=4.2)
Length = 893
Score = 31.1 bits (67), Expect = 0.60
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = -3
Query: 158 RTRNR-RSPGCPTA--DPRSRRGLRARPEPPCRRGPRARSYPR 39
RTRN R+ P DPR+R R R +P R PR R+ PR
Sbjct: 803 RTRNDPRTRNDPRTRNDPRTRNDPRTRNDPRTRNDPRTRNDPR 845
Score = 31.1 bits (67), Expect = 0.60
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = -3
Query: 158 RTRNR-RSPGCPTA--DPRSRRGLRARPEPPCRRGPRARSYPR 39
RTRN R+ P DPR+R R R +P R PR R+ PR
Sbjct: 809 RTRNDPRTRNDPRTRNDPRTRNDPRTRNDPRTRNDPRTRNDPR 851
Score = 31.1 bits (67), Expect = 0.60
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = -3
Query: 158 RTRNR-RSPGCPTA--DPRSRRGLRARPEPPCRRGPRARSYPR 39
RTRN R+ P DPR+R R R +P R PR R+ PR
Sbjct: 815 RTRNDPRTRNDPRTRNDPRTRNDPRTRNDPRTRNDPRTRNDPR 857
Score = 31.1 bits (67), Expect = 0.60
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = -3
Query: 158 RTRNR-RSPGCPTA--DPRSRRGLRARPEPPCRRGPRARSYPR 39
RTRN R+ P DPR+R R R +P R PR R+ PR
Sbjct: 821 RTRNDPRTRNDPRTRNDPRTRNDPRTRNDPRTRNDPRTRNDPR 863
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = -3
Query: 158 RTRNR-RSPGCPTA--DPRSRRGLRARPEPPCRRGPRARSYPR 39
RTRN R+ P DPR+R R R +P R PR R+ P+
Sbjct: 827 RTRNDPRTRNDPRTRNDPRTRNDPRTRNDPRTRNDPRTRNDPQ 869
>SB_23918| Best HMM Match : rve (HMM E-Value=0.013)
Length = 1785
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Frame = -3
Query: 158 RTRNRRSPGCPTADPRSRRGLRA----RPEPPCRRGPRARSYPRAHQAWAWLASRP 3
+ R RRSPGC A R A +P PC+R YP + RP
Sbjct: 145 KKRQRRSPGCHLARKTPRDYPCAHDTDQPSDPCQRTADQNPYPTQRDPYPGTGERP 200
>SB_18691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 119 DPRSRRGLRARPEPPCRRGPRARSYPRAH 33
DPR+R R R +P R PR R+ P+ +
Sbjct: 91 DPRTRNDPRTRNDPRTRNDPRTRNDPQKY 119
>SB_50867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 988
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = -3
Query: 134 GCPTA-DPRSRRGLRARPEPPCRRG--PRARS-YPRAHQAWA 21
G P A DP+ R GLRA E R P A + P ++ AW+
Sbjct: 530 GSPVASDPQGREGLRAHAEDAARSAGTPSAHTPVPESNSAWS 571
>SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -3
Query: 140 SPGCPTADPRSRRGLRARPEPPCRRGPRARS 48
+P PT+ PRSR G R R PP RA S
Sbjct: 341 APPSPTSTPRSRTGSRTR-TPPTPTSSRASS 370
>SB_17889| Best HMM Match : Patched (HMM E-Value=0.14)
Length = 925
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 80 PPCRRGPRARSYPRAHQAWAWL 15
P CR G +A P AH AW WL
Sbjct: 795 PSCRNGFQAT--PTAHNAWHWL 814
>SB_2877| Best HMM Match : Hom_end (HMM E-Value=1.1)
Length = 1250
Score = 27.5 bits (58), Expect = 7.4
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -3
Query: 173 HSLPARTRNRRSPGCPTADPRSRRGLRARPEPPCRRGPRARSYPRAHQAWAWLASR 6
H++ TR++ P A P +++G R P RRG S PRAH A + R
Sbjct: 301 HNMAGATRDQ-----PRAVPAAKQGFR--PCESARRGRGPASSPRAHAAHSMSGKR 349
>SB_10386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +2
Query: 359 LLISVQ*FIGNSEVKSPGTSVPRASLLSPRRGRLIPFHI 475
+ +SV+ N E+ S G + PR ++ P + FH+
Sbjct: 519 MYVSVKLIGSNGELISKGRTTPRRHMIDPEYNEMFLFHV 557
>SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1653
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/37 (45%), Positives = 18/37 (48%)
Frame = -3
Query: 158 RTRNRRSPGCPTADPRSRRGLRARPEPPCRRGPRARS 48
R R+R P PRSR R E P RRG R RS
Sbjct: 608 RERSRERPRSRER-PRSRERSDRRDERPQRRGSRGRS 643
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,672,252
Number of Sequences: 59808
Number of extensions: 132623
Number of successful extensions: 463
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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