Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_G14
         (541 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna b...    32   0.23 
Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical p...    31   0.40 
Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical pr...    31   0.40 
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    30   0.93 
Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF026210-5|AAB71287.1|  632|Caenorhabditis elegans Hypothetical ...    28   3.7  
AF026210-4|AAT81192.1|  627|Caenorhabditis elegans Hypothetical ...    28   3.7  

>U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 5 protein.
          Length = 289

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 164 PARTRNRR-SPGCPTADPRSRRGLRARPEPPCRRGPRARS 48
           P+  R RR SP  P  D R R G R R     RR P ARS
Sbjct: 89  PSPPRRRRPSPSPPRRDRRDRSGSRQRRRASPRRSPAARS 128


>Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical
           protein F02E9.4b protein.
          Length = 1507

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 140 SPGCPTADPRSRRGLRARPEPPCRRGPRARSYPRAHQAWAWL 15
           S GCP  +PR ++G R +  P  R+ P     PR  +A A+L
Sbjct: 254 SAGCPQREPRQQQGGRRQNRPGRRKKPEGP--PRVDEALAYL 293


>Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical
           protein F02E9.4a protein.
          Length = 1505

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 140 SPGCPTADPRSRRGLRARPEPPCRRGPRARSYPRAHQAWAWL 15
           S GCP  +PR ++G R +  P  R+ P     PR  +A A+L
Sbjct: 254 SAGCPQREPRQQQGGRRQNRPGRRKKPEGP--PRVDEALAYL 293


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 20/45 (44%), Positives = 24/45 (53%)
 Frame = -3

Query: 170 SLPARTRNRRSPGCPTADPRSRRGLRARPEPPCRRGPRARSYPRA 36
           S P R R  RSP   +  P  R+  R+R  PP RR  R+RS P A
Sbjct: 116 SPPRRRRISRSPVRRSRSPPRRQVSRSRSPPP-RRQQRSRSPPPA 159



 Score = 29.5 bits (63), Expect = 1.6
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -3

Query: 152 RNRRSPGCPTADPRSRRGLRARPEPPCRRGPRARSYPRAHQ 30
           R RRSP  P     SR  +R    PP R+  R+RS P   Q
Sbjct: 110 RTRRSPSPPRRRRISRSPVRRSRSPPRRQVSRSRSPPPRRQ 150


>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 116 PRSRRGLRARPEPPCRRGPRARSYPRAHQAW 24
           P+ +RG +ARP+   R  PR+R+    H AW
Sbjct: 101 PKPQRGSKARPQKQKR--PRSRTLTAVHDAW 129


>AF026210-5|AAB71287.1|  632|Caenorhabditis elegans Hypothetical
           protein F48A11.5a protein.
          Length = 632

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 140 SPGCPTADPRSRRGLRARPEPPCRRGPRARSYPR-AHQAWAWLASR 6
           S G  +A   SRRG RA P PP  + P   ++P  A Q    LASR
Sbjct: 159 SSGSSSASFSSRRGTRANPVPPPNQEP---AHPESARQNGGILASR 201


>AF026210-4|AAT81192.1|  627|Caenorhabditis elegans Hypothetical
           protein F48A11.5b protein.
          Length = 627

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 140 SPGCPTADPRSRRGLRARPEPPCRRGPRARSYPR-AHQAWAWLASR 6
           S G  +A   SRRG RA P PP  + P   ++P  A Q    LASR
Sbjct: 154 SSGSSSASFSSRRGTRANPVPPPNQEP---AHPESARQNGGILASR 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,143,793
Number of Sequences: 27780
Number of extensions: 88646
Number of successful extensions: 258
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)