Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_G14
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   0.65 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   0.65 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.1  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.6 bits (51), Expect = 0.65
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 167 LPARTRNRRSPGCPTADPRSRRGLRARPEPPCRRGPRARSY 45
           L   + + R+P    A+P ++RG    P P  RR  +   Y
Sbjct: 877 LQESSTDSRNPALALAEPYNQRGTVVSPPPTKRRTMKVVKY 917


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
            isoform A protein.
          Length = 969

 Score = 24.6 bits (51), Expect = 0.65
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 167  LPARTRNRRSPGCPTADPRSRRGLRARPEPPCRRGPRARSY 45
            L   + + R+P    A+P ++RG    P P  RR  +   Y
Sbjct: 915  LQESSTDSRNPALALAEPYNQRGTVVSPPPTKRRTMKVVKY 955


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 420 TLVPGDLTSLFPMNYWTE 367
           T  PG++ S+ P+N +T+
Sbjct: 27  TRPPGEINSINPINVYTK 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,405
Number of Sequences: 438
Number of extensions: 1089
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)