Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_G14
         (541 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ...    30   1.1  
At5g62550.1 68418.m07850 expressed protein                             28   3.5  
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu...    28   3.5  
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu...    28   3.5  
At2g02790.1 68415.m00222 calmodulin-binding family protein very ...    27   6.1  

>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
           protein low similarity to splicing factor SC35
           [Arabidopsis thaliana] GI:9843653; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 261

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 116 PRSRRGLRARPEPPCRRGPRARSYPRAHQAWAWLASRP 3
           P+++ G R RP PP +RG R      A +  +W A+ P
Sbjct: 168 PKNQLGPRERPPPPKKRGRRKEEEGEAEEI-SWSAAAP 204


>At5g62550.1 68418.m07850 expressed protein 
          Length = 487

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 389 NSEVKSPGTSVPRASLLSPRRGRLIP 466
           NS VKS  +SV   S + P+R R++P
Sbjct: 91  NSSVKSVSSSVTSLSEVKPKRSRIVP 116


>At4g35785.2 68417.m05083 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to transformer-SR
           ribonucleoprotein [Nicotiana tabacum]
           gi|1781299|emb|CAA70700
          Length = 141

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = -3

Query: 164 PARTRNRRSPGCPTADPRSRRGLRARPEPPCRRGPRARSYPR 39
           P R R+ RSP       RSR   R+R     R   R+RS PR
Sbjct: 5   PQRRRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPR 46


>At4g35785.1 68417.m05082 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to transformer-SR
           ribonucleoprotein [Nicotiana tabacum]
           gi|1781299|emb|CAA70700
          Length = 140

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = -3

Query: 164 PARTRNRRSPGCPTADPRSRRGLRARPEPPCRRGPRARSYPR 39
           P R R+ RSP       RSR   R+R     R   R+RS PR
Sbjct: 5   PQRRRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPR 46


>At2g02790.1 68415.m00222 calmodulin-binding family protein very low
           similarity to SP|P12036 Neurofilament triplet H protein
           {Homo sapiens}; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 636

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/47 (31%), Positives = 18/47 (38%)
 Frame = -3

Query: 170 SLPARTRNRRSPGCPTADPRSRRGLRARPEPPCRRGPRARSYPRAHQ 30
           S  AR R + SP      P      R    PP   G  +   PRAH+
Sbjct: 518 SAKARIRGQGSPRIAQEKPEKNGTTRRHSLPPAANGKLSTMSPRAHR 564


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,857,909
Number of Sequences: 28952
Number of extensions: 83638
Number of successful extensions: 192
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)