Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_G12
(496 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po... 39 5e-04
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 29 0.38
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 28 0.89
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 27 1.2
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo... 27 1.6
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 27 1.6
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 27 2.1
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 26 2.7
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 25 4.7
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 6.3
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 25 8.3
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 25 8.3
>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 38.7 bits (86), Expect = 5e-04
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 9/121 (7%)
Frame = +1
Query: 1 YHHCTLLVNANKADLSKALAKRET----HATASTRSEVANLTDLDNRVTVESLQTALGYE 168
YHH T+L+N++ + + L T +STRS V+N L + + L ++
Sbjct: 166 YHHGTMLLNSDLEGVREYLRSPSTGILSKGVSSTRSPVSNTKLLKAEFIKQVISCFLLHK 225
Query: 169 YLRTPALHLDH---GGQNLISKQRGFQFVNPTDDWF--PGLADLKNELQSWDWCYGKTPI 333
T L + L + +D P + NELQSW+W +G+TP
Sbjct: 226 SHSTTTKPLSKPRASSKRLYDIEPKSVITLEQNDLLGVPSILKAVNELQSWEWTFGQTPS 285
Query: 334 F 336
F
Sbjct: 286 F 286
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 29.1 bits (62), Expect = 0.38
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = +1
Query: 31 NKADLSK---ALAKRETHATASTRSEVANLT--DLDNRVTVESLQTALGYEYLRTP 183
+K D +K LA +E A +S S +++ D TV L+ ++ YEY RTP
Sbjct: 525 SKTDFNKLPVTLADKEVFAPSSDASSDKSVSYASFDEPFTVAELKYSIKYEYTRTP 580
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 27.9 bits (59), Expect = 0.89
Identities = 27/122 (22%), Positives = 46/122 (37%)
Frame = +1
Query: 76 ATASTRSEVANLTDLDNRVTVESLQTALGYEYLRTPALHLDHGGQNLISKQRGFQFVNPT 255
A +T ++ ANL + +T E+ T+ G E +P+L H G +
Sbjct: 67 AAPNTHAQQANLQSGNTSITHETQSTSRGQEATTSPSLSASHEKPARPQTGEGSDNEDED 126
Query: 256 DDWFPGLADLKNELQSWDWCYGKTPIFTVSRTFPVPAEILAPSKVYSATQELVITMTVEK 435
+D + DL ++ Q + + VP E+L Y T+ V +
Sbjct: 127 EDIDALIEDLYSQDQEEEQVEEEESPGPAGAAKVVPEELLETDPKYGLTESEVEERKKKY 186
Query: 436 GL 441
GL
Sbjct: 187 GL 188
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1220
Score = 27.5 bits (58), Expect = 1.2
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +1
Query: 337 TVSRTFPV--PAEILAPSKVYSATQELVITMTVEKGLINDVTLNIPP 471
TVS T V PA S VYS TQE T+ G ++ I P
Sbjct: 673 TVSGTVEVIEPAAGTVTSTVYSGTQEYTTTLATASGTVSGTVEVIEP 719
Score = 26.2 bits (55), Expect = 2.7
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +1
Query: 337 TVSRTFPV--PAEILAPSKVYSATQELVITMTVEKGLINDVTLNIPP 471
TVS T V PA + VYS TQE T+ G ++ I P
Sbjct: 637 TVSGTVEVIEPAAGTVTTTVYSGTQEYTTTLATASGTVSGTVEVIEP 683
Score = 26.2 bits (55), Expect = 2.7
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +1
Query: 337 TVSRTFPV--PAEILAPSKVYSATQELVITMTVEKGLINDVTLNIPP 471
TVS T V PA + VYS TQE T+ G ++ I P
Sbjct: 709 TVSGTVEVIEPAAGTVTTTVYSGTQEYTTTLATASGTVSGTVEVIEP 755
Score = 24.6 bits (51), Expect = 8.3
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Frame = +1
Query: 325 TPIFTVSRTFPVPAEILAP------SKVYSATQELVITMTVEKGLINDVTLNIPP 471
T + + + T P E++ P + VYS TQE T+ G ++ I P
Sbjct: 593 TTLASATDTVPGTVEVVEPEAGTVTTTVYSGTQEYTTTLATASGTVSGTVEVIEP 647
>SPBC23E6.05 |arx1||ribosomal export complex Arx1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 27.1 bits (57), Expect = 1.6
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 355 PVPAEILAPSKVYSATQELVITMTVEKGLINDVTLNIPPGLVESGF 492
P+P I +PS V + + VIT + +T+ PP V+S F
Sbjct: 346 PMPVLISSPSNVIAREELTVITQPNPSSDLLCLTVPTPPSYVKSDF 391
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 27.1 bits (57), Expect = 1.6
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = -2
Query: 246 NELESTLF*DQVLSSVI*MECRSAEVLVA*RSL*AFHSHSIIQVGQIRHLGPRRCRRVSL 67
N + TL DQV +I EC S EV + +L SH + +V ++ C +VSL
Sbjct: 382 NSFDFTLENDQVPPRLIASECTSLEVFIQHITLSRILSHFVRKVYPVKSPSDSHC-KVSL 440
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 26.6 bits (56), Expect = 2.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 271 GLADLKNELQSWDWCYGKTPIFTVS 345
G L NEL +W YG TP F++S
Sbjct: 94 GSKTLTNELSTWS--YGLTPFFSIS 116
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 26.2 bits (55), Expect = 2.7
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 284 KSARPGNQSSVGLTNWN 234
K +RP +QSS+ L+NW+
Sbjct: 146 KKSRPSSQSSIFLSNWS 162
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.4 bits (53), Expect = 4.7
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Frame = +3
Query: 69 DSRDGIDAVRGGESDRLG*SSDCGKPTNCARLRV------PPHSGTPSRSRR 206
DS VR + DR SS P++ +R R PP+S SRSRR
Sbjct: 138 DSHQSRSPVRSRDRDRSSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSRR 189
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 361 PAEILAPSKVYSATQELVITMT 426
P +I AP+ Y+ATQE ++ T
Sbjct: 395 PQKITAPTSPYAATQEELLAFT 416
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 24.6 bits (51), Expect = 8.3
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 100 VANLTDLDNRVTVESLQTALGYEYLRTPALHLDH 201
V N+TD+D+++ + + Q L EY + + H
Sbjct: 83 VQNVTDIDDKIILRARQQYLFEEYKKQQGTNKSH 116
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.6 bits (51), Expect = 8.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 132 HSIIQVGQIRHLGPRRCRRVSL 67
HS +++GQI HL + R++ L
Sbjct: 84 HSFLEIGQIPHLKLSKTRKIVL 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.133 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,004,839
Number of Sequences: 5004
Number of extensions: 40365
Number of successful extensions: 123
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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