Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_G12
         (496 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0655 + 30668706-30668849,30669043-30669471                       29   2.1  
05_04_0214 - 19111493-19112413,19112674-19112750,19113843-191144...    28   3.6  
01_05_0471 + 22535477-22535609,22535714-22535808,22535929-225360...    27   6.3  

>02_05_0655 + 30668706-30668849,30669043-30669471
          Length = 190

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 75  RDGIDAVRGGESDRLG*SSDCGKPT-NCARLRVPPHSGTPSRSRR 206
           ++ I   + G   RLG  S C  P    A    PPH+ TPS  RR
Sbjct: 47  KEVIKTSQSGSLLRLGLVSPCSAPPLPTAAAYTPPHTNTPSSRRR 91


>05_04_0214 -
           19111493-19112413,19112674-19112750,19113843-19114412,
           19114605-19114754,19115499-19115643
          Length = 620

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 361 PAEILAPSKVYSATQELVITMTVEKGLINDVTLNIP 468
           P    A +   S TQE+ ++ TVE G  NDV L+ P
Sbjct: 510 PTSSSAINNQNSKTQEMSVSQTVELGCGNDVMLDWP 545


>01_05_0471 +
           22535477-22535609,22535714-22535808,22535929-22536050,
           22536165-22536702,22536774-22538105
          Length = 739

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 81  GIDAVRGGESDRLG*SSDCGKPTN-CARLRVPPHSGTPSRSRRTKPDLKTTWIPIR*PYR 257
           G+D   GG     G SS     T  C+R ++PP + +P  SRR+        +  R P+R
Sbjct: 155 GVDGGCGGGGGYEGDSSIRSLYTRRCSRGKLPPATPSPDSSRRSVDSRTLPELTTRPPFR 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,596,811
Number of Sequences: 37544
Number of extensions: 287447
Number of successful extensions: 775
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)