Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_G12
(496 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55885| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.52
SB_2285| Best HMM Match : IncA (HMM E-Value=3.2) 30 0.91
SB_4793| Best HMM Match : DUF1279 (HMM E-Value=0.31) 30 1.2
SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_56769| Best HMM Match : UIM (HMM E-Value=0.0025) 28 4.9
SB_58049| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_54248| Best HMM Match : ECH (HMM E-Value=6.6e-11) 27 6.4
SB_35537| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_40116| Best HMM Match : EGF (HMM E-Value=0) 27 8.5
SB_34308| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_18508| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_53092| Best HMM Match : TT_ORF2 (HMM E-Value=3.4) 27 8.5
>SB_55885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 301
Score = 31.1 bits (67), Expect = 0.52
Identities = 19/68 (27%), Positives = 27/68 (39%)
Frame = +1
Query: 31 NKADLSKALAKRETHATASTRSEVANLTDLDNRVTVESLQTALGYEYLRTPALHLDHGGQ 210
++ + K THA S S+ A E T+LG ++LR +LD
Sbjct: 36 DEESIPKTSTSLRTHAAHSMASQTAGTASAVTSFITEGAATSLGLQFLREEYPNLDENLI 95
Query: 211 NLISKQRG 234
S QRG
Sbjct: 96 RFQSDQRG 103
>SB_2285| Best HMM Match : IncA (HMM E-Value=3.2)
Length = 293
Score = 30.3 bits (65), Expect = 0.91
Identities = 17/55 (30%), Positives = 22/55 (40%)
Frame = +1
Query: 70 THATASTRSEVANLTDLDNRVTVESLQTALGYEYLRTPALHLDHGGQNLISKQRG 234
THA T S+ + E T LG ++LR +LD S QRG
Sbjct: 49 THAAHKTASQTTGTASAETSFITEGAATRLGLQFLREEYPNLDENLIQFQSDQRG 103
>SB_4793| Best HMM Match : DUF1279 (HMM E-Value=0.31)
Length = 396
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +1
Query: 70 THATASTRSEVANLTDLDNRVTVESLQTALGYEYLRTPALHLDHGGQNLISKQRG 234
THA T S+ A T + E T LG ++LR +L+ S +RG
Sbjct: 49 THAAHRTASQTAGTTSAETSFITEGAATRLGLQFLREEYPNLNENLIRFQSDRRG 103
>SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1449
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +1
Query: 250 PTDDWFPGLADLKNELQSWDWCYGKTPIFTVSRTFPVPAEILAPSKV 390
PT FP D + LQ W Y K+ IF P+P P ++
Sbjct: 313 PTKLPFPATEDNRESLQQWLLDYYKSSIFNTCEHQPLPLMDSIPIRI 359
>SB_56769| Best HMM Match : UIM (HMM E-Value=0.0025)
Length = 358
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +1
Query: 91 RSEVANLTDLDNRVTVESLQTALGYEYLRTPALHLDHGGQNLISKQRGF 237
+ + L + +ESL + YLRTP H+ L +K+R F
Sbjct: 58 KKTIFELIQTEVEEAIESLSQMVARPYLRTPRSHIIQATSLLANKRRTF 106
>SB_58049| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 443
Score = 27.5 bits (58), Expect = 6.4
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = -1
Query: 214 GFVLRDLDGVPECGGTRSLAQFVGFPQSLDY--PSRSDSPPRTASMPSRESH 65
GF+L+ L G P G + GFP + + P D P MP + +
Sbjct: 245 GFILKGLQGPPGLNGQAGTSGAPGFPGAPGFQGPPGLDGMPGAPGMPGPQGY 296
>SB_54248| Best HMM Match : ECH (HMM E-Value=6.6e-11)
Length = 230
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 187 VPECGGTRSLAQFVGFPQSLD 125
+P GGT+ L + VG P SLD
Sbjct: 48 LPGAGGTQRLPRLVGLPDSLD 68
>SB_35537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 150 NCARLRVPPHSGTPSRSRRTKPDLKTTWI 236
NC LR+PP G R P L+ WI
Sbjct: 60 NCGTLRLPPLRGCRLIYGRHSPHLRVVWI 88
>SB_40116| Best HMM Match : EGF (HMM E-Value=0)
Length = 340
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 112 TDLDNRVTVESLQTALGYEYLRTPALHLDHG 204
TD+D+ V+S A Y +TPAL L +G
Sbjct: 304 TDMDSHHLVDSCDLASNYYSKQTPALRLVYG 334
>SB_34308| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 517
Score = 27.1 bits (57), Expect = 8.5
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +1
Query: 67 ETHATASTRSEVANLTDLDNRVTVESLQTALGYEYLRTPALHLDHGGQNLISKQRGFQFV 246
E H T+ R L R ++S+QT +E + +HL+ +RG+++V
Sbjct: 263 EHHVTSDCRCIKQKLPKHTQRAPMQSIQTMAQFELVSLNVVHLE-------CSRRGYEYV 315
Query: 247 NPTDDWFPGLA 279
D+F A
Sbjct: 316 LVVVDYFTRFA 326
>SB_18508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 27.1 bits (57), Expect = 8.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 103 ANLTDLDNRVTVESLQTALGYEYLRTPALHLDHGGQNLISKQR 231
ANL+ N + + S+ A R ALHL G Q +++K R
Sbjct: 105 ANLSSFGNVMVLASVMMAAMISVDRYLALHLQMGYQTVVTKSR 147
>SB_53092| Best HMM Match : TT_ORF2 (HMM E-Value=3.4)
Length = 598
Score = 27.1 bits (57), Expect = 8.5
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +1
Query: 430 EKGLINDVTLNIPP 471
+ GL+NDVTL++PP
Sbjct: 85 DSGLLNDVTLSVPP 98
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.133 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,654,080
Number of Sequences: 59808
Number of extensions: 335741
Number of successful extensions: 790
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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