Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_G12
         (496 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09430.1 68416.m01120 hypothetical protein                          30   0.98 
At1g02940.1 68414.m00261 glutathione S-transferase, putative sim...    30   0.98 
At1g54280.1 68414.m06188 haloacid dehalogenase-like hydrolase fa...    28   3.0  
At3g60110.1 68416.m06712 DNA-binding bromodomain-containing prot...    28   4.0  
At5g18270.2 68418.m02148 no apical meristem (NAM) family protein...    27   5.3  
At5g18270.1 68418.m02147 no apical meristem (NAM) family protein...    27   5.3  
At5g66610.1 68418.m08396 LIM domain-containing protein contains ...    27   6.9  
At4g00340.1 68417.m00045 S-locus glycoprotein family protein / c...    27   6.9  
At3g52260.2 68416.m05743 pseudouridine synthase family protein s...    27   9.2  
At3g52260.1 68416.m05744 pseudouridine synthase family protein s...    27   9.2  
At3g30520.1 68416.m03863 hypothetical protein                          27   9.2  

>At3g09430.1 68416.m01120 hypothetical protein
          Length = 247

 Score = 29.9 bits (64), Expect = 0.98
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 139 PQSLDYPSRSDSPPRTASMPSRESHVLQVP 50
           P ++ YP+ + SPP   S PS +S +LQ+P
Sbjct: 45  PLAIRYPNYN-SPPTPVSYPSPQSKILQIP 73


>At1g02940.1 68414.m00261 glutathione S-transferase, putative
           similar to glutathione S-transferase GI:860955 from
           [Hyoscyamus muticus]
          Length = 256

 Score = 29.9 bits (64), Expect = 0.98
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 447 VNETLFHGHSNNQFLSGRVDF*WCKYLGRNRKRSAHG 337
           V ET +H H N  F S R  F WC+ L R  +   +G
Sbjct: 8   VPETCYH-HCNQTFESSRQCFKWCQELARKDEYKIYG 43


>At1g54280.1 68414.m06188 haloacid dehalogenase-like hydrolase family
            protein similar to Potential phospholipid-transporting
            ATPase (EC 3.6.3.1) from Homo sapiens [SP|O43520], Mus
            musculus [SP|P70704]; contains InterPro accession
            IPR005834: Haloacid dehalogenase-like hydrolase
          Length = 1240

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 316  YGKTPIFTVSRTFPVPAEILAPSKVYSATQELVITMT 426
            YG  P+      F +  EILAP+ ++  T  LVI  T
Sbjct: 1112 YGMLPVKLSGNIFHMLVEILAPAPIFWLTSLLVIAAT 1148


>At3g60110.1 68416.m06712 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 438

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 25  NANKADLSKALAKRETHATASTRSEVANLTDLDNRVTVESLQTALGYEY 171
           N +   ++KA    E   T S RSE++N  +LD   T   L    G +Y
Sbjct: 33  NPDPDPVNKAETPEEEERTVSKRSEMSNSGELDESGTSNCLGKRKGQKY 81


>At5g18270.2 68418.m02148 no apical meristem (NAM) family protein
           contains Pfam PF02365 : No apical meristem (NAM)
           protein; similar to cup-shaped cotyledon CUC2
           (GI:1944132) [Arabidopsis thaliana]
          Length = 335

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 193 LDHGGQNLISKQRGFQFVNPTDD 261
           L+HGG+ L+    GF+F +PTD+
Sbjct: 11  LNHGGEELVDLPPGFRF-HPTDE 32


>At5g18270.1 68418.m02147 no apical meristem (NAM) family protein
           contains Pfam PF02365 : No apical meristem (NAM)
           protein; similar to cup-shaped cotyledon CUC2
           (GI:1944132) [Arabidopsis thaliana]
          Length = 335

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 193 LDHGGQNLISKQRGFQFVNPTDD 261
           L+HGG+ L+    GF+F +PTD+
Sbjct: 11  LNHGGEELVDLPPGFRF-HPTDE 32


>At5g66610.1 68418.m08396 LIM domain-containing protein contains
           Pfam profile PF00412: LIM domain
          Length = 529

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = -3

Query: 314 HQSQLCNSFFKSARPGNQSSVGLTNWNPRCFEIRFC 207
           H   +C+    +   G        NW+P CF  R+C
Sbjct: 196 HPHSICDGCKSAIEYGRSVHALGVNWHPECFCCRYC 231


>At4g00340.1 68417.m00045 S-locus glycoprotein family protein /
           curculin-like (mannose-binding) lectin family protein /
           PAN domain-containing protein contains Pfam profiles:
           PF01453 lectin (probable mannose binding), PF00954
           S-locus glycoprotein family, PF00024 PAN domain
          Length = 402

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +1

Query: 241 FVNPTDDWFPGL-ADLKNELQSWDWCYGKTPIFTVSRTFP 357
           F NPTD W PG+       + SW   +  +P F   R  P
Sbjct: 138 FDNPTDTWLPGMNVTGLTAMTSWRSLFDPSPGFYSLRLSP 177


>At3g52260.2 68416.m05743 pseudouridine synthase family protein
           similar to SP|P39219 Ribosomal large subunit
           pseudouridine synthase A (EC 4.2.1.70) (Pseudouridylate
           synthase) (Uracil hydrolyase) {Escherichia coli};
           contains Pfam profile PF00849: RNA pseudouridylate
           synthase
          Length = 369

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 271 GLADLKNELQSWDWCYGKTPIFTVSRTFPVPAEI 372
           GL   +  L    WC+GK   +  SR  P P  +
Sbjct: 121 GLFQQRTVLTQLQWCFGKNDSYIGSRESPHPVPV 154


>At3g52260.1 68416.m05744 pseudouridine synthase family protein
           similar to SP|P39219 Ribosomal large subunit
           pseudouridine synthase A (EC 4.2.1.70) (Pseudouridylate
           synthase) (Uracil hydrolyase) {Escherichia coli};
           contains Pfam profile PF00849: RNA pseudouridylate
           synthase
          Length = 294

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 271 GLADLKNELQSWDWCYGKTPIFTVSRTFPVPAEI 372
           GL   +  L    WC+GK   +  SR  P P  +
Sbjct: 121 GLFQQRTVLTQLQWCFGKNDSYIGSRESPHPVPV 154


>At3g30520.1 68416.m03863 hypothetical protein 
          Length = 397

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
 Frame = +3

Query: 138 GKPTNCARLRVP---PHSGTPSRSRRTKP 215
           G P N A+ R P   PH GTP  +  T P
Sbjct: 305 GTPPNVAQCRTPPNAPHWGTPPNAHGTTP 333


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,738,571
Number of Sequences: 28952
Number of extensions: 223971
Number of successful extensions: 569
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)