Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_G09
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe...    30   0.26 
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    27   1.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   5.6  
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    25   7.5  
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch...    25   7.5  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    25   9.9  
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    25   9.9  

>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +1

Query: 220 VIMTSGRIIIYGGRGALGSACVNHFKSSNWWVANIDLNPNESADFNVAVPKD-ASWVQQE 396
           +I     + + G +  +     N   +  W V N++L+P  S+ F    P D A  V QE
Sbjct: 62  IIRAGENVFVCGIKAEIAEPFENS-PNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQE 120

Query: 397 QHVVNELSNALQGQKV 444
            H   + SN +  Q +
Sbjct: 121 LHQTLQQSNLINLQSL 136


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -1

Query: 311 HQLEDLK*LTQADPSAPLPPYIMILPLVIITSIHSRGQEL 192
           H+L+ ++ +  AD    L PY++ L + ++  I  R + L
Sbjct: 166 HRLDIIEYILNADKETDLKPYVLELAMTVVLDIEFRNRLL 205


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 96   SLRVSDFVIYFGN*QKSKRLF*RN 167
            SL  + FV+Y GN   S R+F RN
Sbjct: 3422 SLMEASFVVYAGNLDPSMRIFLRN 3445


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = +1

Query: 391 QEQHVVNELS---NALQGQKVNAVI-CVAGGWAGGNAAKDLSKQADLMWRQSVWSSTIAA 558
           +E HV        N +Q   +N  I CV  G       KD S++ D    + +W+ T++A
Sbjct: 334 EETHVTGNYDLTVNTVQANPINMQIKCVCYGNRIYKYEKDESEEEDESKEKDLWTGTVSA 393


>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 322 IDLNPNESADFNVAVP-KDASWVQQEQHVVNEL 417
           + L PN    FN+ +P + A+ +QQ   V+  L
Sbjct: 76  VSLTPNPVISFNIKIPSRTANAIQQSNRVIVHL 108


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 334 PNESADFNVAVPKDASWVQQEQHVVNEL 417
           PNE  D   A  KD   V++EQ V  ++
Sbjct: 852 PNEVDDAEAADEKDGKLVEEEQRVTGDV 879


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 498 PE*AGRLDVAAIGLEFDNRSHISCKILGAGWITCLDWC 611
           PE A ++ ++ +  +  NR  +   ILG  W+  LD C
Sbjct: 386 PEGAKKIILSLLNPDSQNRPSLD-SILGTAWVRKLDCC 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,088
Number of Sequences: 5004
Number of extensions: 52094
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)