Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_G09
         (668 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0489 + 18269824-18270270,18271659-18271948,18272341-182725...    28   5.9  
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284...    28   5.9  
11_03_0096 + 9956702-9956818,9957056-9957265                           28   7.7  
03_02_0839 - 11653332-11653373,11653515-11653586,11653678-11654223     28   7.7  
01_05_0249 - 19903154-19903454,19904114-19904168,19904707-199047...    28   7.7  

>10_08_0489 +
           18269824-18270270,18271659-18271948,18272341-18272512,
           18272608-18272730,18272832-18272960,18273061-18273255,
           18273384-18273470,18273563-18273835,18274047-18274154,
           18274769-18275116
          Length = 723

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +1

Query: 37  YRFYVICLLVGSGDIDS*YLAYASVILSFT--LVIDKKVKGYF 159
           Y F+V+CL      ++S  +A ASVI +F   ++I   ++G F
Sbjct: 533 YLFFVLCLYASVTVVESLMMAIASVIPNFLMGIIIGAGIQGIF 575


>04_04_0465 +
           25427065-25427113,25428099-25428227,25428387-25428479,
           25428681-25428953,25429037-25429288,25429735-25430118,
           25430243-25430483,25431986-25432736
          Length = 723

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 457 CVAGGWAGGNAAKDLSKQADLMWRQSVWSSTIAAT 561
           C +G + GG   +   ++A   W    WS   AAT
Sbjct: 592 CTSGSFGGGGGEEYEDEEASSPWNNRSWSHDFAAT 626


>11_03_0096 + 9956702-9956818,9957056-9957265
          Length = 108

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = +1

Query: 235 GRIIIYGGR----GALGSACVNHFKSSNWWV-ANIDLNPNESADFNVAVPKDASWVQQEQ 399
           GR    GGR    G + +A      ++++W   +    P+     NVAV  +    Q E+
Sbjct: 13  GRAATLGGRRQLAGQVQAAARRRGHAASYWTWGSRSACPSTHGSQNVAVEMEEEEGQMEE 72

Query: 400 HVVNEL 417
           HVV EL
Sbjct: 73  HVVQEL 78


>03_02_0839 - 11653332-11653373,11653515-11653586,11653678-11654223
          Length = 219

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 406 VNELSNALQGQKVNAVICVAGGWAGGNAAKDLSKQADLMWR 528
           ++E+   L G  ++ ++   GG AG  AA    K  D +WR
Sbjct: 21  LSEVEGQLHGVNLDDLLRTGGGGAGAGAAAAGRKTVDEVWR 61


>01_05_0249 -
           19903154-19903454,19904114-19904168,19904707-19904791,
           19905140-19905511
          Length = 270

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 418 SNALQGQKVNAVICVAGGWAGGNAAK--DLSKQADLMWRQ 531
           SNA+   K+  V+  A G  G +AAK  ++ K AD+M ++
Sbjct: 53  SNAVAISKLRKVVATARGGGGSDAAKALEVCKAADVMHKE 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,061,856
Number of Sequences: 37544
Number of extensions: 382145
Number of successful extensions: 1034
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)