Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_G09
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1677| Best HMM Match : WD40 (HMM E-Value=0.00074)                  113   2e-25
SB_14107| Best HMM Match : Herpes_UL3 (HMM E-Value=4.8)                29   4.5  
SB_2806| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  

>SB_1677| Best HMM Match : WD40 (HMM E-Value=0.00074)
          Length = 1087

 Score =  113 bits (271), Expect = 2e-25
 Identities = 46/89 (51%), Positives = 63/89 (70%)
 Frame = +1

Query: 223 IMTSGRIIIYGGRGALGSACVNHFKSSNWWVANIDLNPNESADFNVAVPKDASWVQQEQH 402
           +++  R++IYGG+GALG+ CV++FK+  WWVA++DL PNE A  NV V    SW +Q   
Sbjct: 90  VVSGSRVLIYGGKGALGATCVSYFKAREWWVASVDLFPNEEAHANVIVDPAKSWDEQNNE 149

Query: 403 VVNELSNALQGQKVNAVICVAGGWAGGNA 489
           V  ++   L G K+NA+ICVAGGWAGG A
Sbjct: 150 VQKKVDELLDGNKLNAIICVAGGWAGGTA 178


>SB_14107| Best HMM Match : Herpes_UL3 (HMM E-Value=4.8)
          Length = 314

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 610 HQSRQVIHPAPSILQLMWLRLSNSRPIAATSSLP 509
           H SRQ+    P++L  ++   SN +P+ A   LP
Sbjct: 138 HFSRQMPQFPPNVLNYVYASTSNRKPVTANRGLP 171


>SB_2806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 600

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 145 VKGYFSGTQTLPLLSVSSCPRE*IDVIMTSGRIIIYGGRGALGSACVN 288
           V+ Y   T+    ++  S PR  + V +  G++   GGR   GS+C+N
Sbjct: 393 VERYDPDTKQWSFVAAMSTPRSTVGVAVMDGKLYAVGGRD--GSSCLN 438


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,272,214
Number of Sequences: 59808
Number of extensions: 415880
Number of successful extensions: 910
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)