Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_G09
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81113-1|CAB03278.1|  236|Caenorhabditis elegans Hypothetical pr...   153   1e-37
AC024817-30|AAF59582.2|  167|Caenorhabditis elegans Hypothetical...    29   2.3  

>Z81113-1|CAB03278.1|  236|Caenorhabditis elegans Hypothetical
           protein T03F6.1 protein.
          Length = 236

 Score =  153 bits (371), Expect = 1e-37
 Identities = 72/147 (48%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
 Frame = +1

Query: 226 MTSGRIIIYGGRGALGSACVNHFKSSNWWVANIDLNPNESADFNVAVPKDASWVQQEQHV 405
           M+SG++I+YGG+GALGSA +  FK + + V NIDL+ N+ AD N+ V  + +W +QEQ +
Sbjct: 1   MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSI 60

Query: 406 VNELSNALQGQKVNAVICVAGGWAGGNA-AKDLSKQADLMWRQSVWSSTIAATLAAKYXX 582
           + + +++LQG +V+ V CVAGGWAGG+A +KD  K ADLM +QSVWSS IAA LA  +  
Sbjct: 61  LEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLK 120

Query: 583 XXXXXXXXXXXXXXXXTPGMIGYGMAK 663
                           TP MIGYGMAK
Sbjct: 121 PGGLLQLTGAAAAMGPTPSMIGYGMAK 147


>AC024817-30|AAF59582.2|  167|Caenorhabditis elegans Hypothetical
           protein Y54G2A.16 protein.
          Length = 167

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +1

Query: 58  LLVGSGDIDS*YLAYASVI-LSFTLVIDKKVKGY 156
           LL+GS  I   YL + ++I ++F L+ D+K+ GY
Sbjct: 115 LLIGSTGIGLLYLWFLTIISMTFVLIRDRKIMGY 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,774,897
Number of Sequences: 27780
Number of extensions: 298913
Number of successful extensions: 778
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)