Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_G08
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   2.2  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    26   3.9  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   5.2  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    26   5.2  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   6.8  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   6.8  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   6.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   9.0  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 183 SPLHASSPGLPPAH 142
           SPLHA+S  LPP+H
Sbjct: 43  SPLHANSVSLPPSH 56


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 219 VLPTSYMRGPPESPLHASSPGLPPAHSCSLVITSASPP 106
           + P++Y+R   +S + A  P  PP  +     +S++PP
Sbjct: 188 IFPSNYVRLLEDSAVKAQPPPPPPQQNYPPAASSSAPP 225


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 353 CSHYFRLLLYFLSMVCTRKRSY 288
           CS    LL+ FL+MVC+ K  Y
Sbjct: 872 CSDVLYLLMEFLNMVCSPKSYY 893


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 311 VCTRKRSYIRRGCSLCRNISVRN*QIQPLRKC 216
           V TR+R  + R C +CR   ++   ++P + C
Sbjct: 20  VATRRRR-VTRACDMCRRKKIKCDGLRPCKNC 50


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -1

Query: 334 YYCTSYPWYVLVNVRIYAGDVPCAAIFRSVTDRSNHYESVTHFIHEGSTG 185
           +YC +  W   +N   Y G +  A +F+S+   S  Y+   + +   S G
Sbjct: 524 WYCLARSWERYINDPAYIGSMAFAFLFQSLIIGSIFYDMKLNTVDVFSRG 573


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 233  GSVSYGPKYCGTRNIPGVYTNVYEYIPWIRSTII 334
            G+VS    YC   + PG  + V+  IP+  S+ +
Sbjct: 1072 GNVSLTVGYCSAEHGPGSTSKVFSRIPYSASSTV 1105


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 26/82 (31%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
 Frame = -2

Query: 288  YTPGMFLVPQYFGP*LTDPTITKVLPTSYMRGPPESPLHASSPGLPPAHSCSLVITSA-- 115
            Y P    VP    P    P++T  LP    R PP S      P  PP  S +L  +SA  
Sbjct: 1033 YEPPTVSVPS---PSALSPSVTPQLPPVSSRLPPVSATRPQIPQPPPV-STALPSSSAVS 1088

Query: 114  SPPRNVLCAA*HLSLSTYGSLT 49
             PP          + ST   LT
Sbjct: 1089 RPPIATSAGRSSTAASTSAPLT 1110


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -2

Query: 249  P*LTDPTITKVLPTSYMRGPPESPLHASSPG--LPPAHSCSLVITSASPP 106
            P + +  +  ++P S  + PP S   A++P   LPP+ S    + S +PP
Sbjct: 1487 PAVPNVPVPSMIP-SVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPP 1535


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,597,251
Number of Sequences: 5004
Number of extensions: 52873
Number of successful extensions: 152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)