Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_G08
         (631 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    31   0.63 
At4g38340.1 68417.m05420 RWP-RK domain-containing protein simila...    30   1.1  
At2g33780.1 68415.m04143 VQ motif-containing protein contains PF...    29   3.4  
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1...    29   3.4  
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex...    28   4.4  
At3g09780.1 68416.m01161 protein kinase family protein contains ...    28   5.9  
At3g24480.1 68416.m03070 leucine-rich repeat family protein / ex...    27   7.8  
At1g79480.1 68414.m09263 hypothetical protein low similarity to ...    27   7.8  

>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 213 PTSYMRGPPESPLHASSPGLPPAHSC 136
           P  +   PP SP+H SSP  PP+  C
Sbjct: 675 PEVHYHSPPPSPVHYSSPPPPPSAPC 700



 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -2

Query: 213 PTSYMRGPPESPLHASSPGLPPAH 142
           P  Y   PP  P+H SSP  P  H
Sbjct: 655 PVYYSSPPPPPPVHYSSPPPPEVH 678


>At4g38340.1 68417.m05420 RWP-RK domain-containing protein similar
           to nodule inception protein GI:6448579 from (Lotus
           japonicus); contains Pfam profile: PF02042 RWP-RK domain
          Length = 767

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = -2

Query: 201 MRGPPESPLHASSPGLPPAHSCSL--VI--TSASPPRNVLCAA*HLSLSTYGSLTCCL 40
           M GP +  LHA +   PP+ S SL  V+  +S    R +L    HLSLS + + + CL
Sbjct: 1   MVGPFKKILHAHNQRFPPSSSSSLDPVVDDSSRKQTRIILSYLLHLSLSLHITYSLCL 58


>At2g33780.1 68415.m04143 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 204

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 240 TDPTITKVLPTSYMRGPPESPLHASSPGLPPAHS 139
           TDP+  K +    + G P++P H   P  PP HS
Sbjct: 41  TDPSSFKQV-VQLLTGIPKNPTHQPDPRFPPFHS 73


>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
           non-consensus splice site at the intron:exon boundary
           (AT:exon)
          Length = 247

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 234 PTITKVLPTSYMRGP--PESPLHASSPGLPPAHSCSLVITSASPP 106
           P  T   P S  + P  P +P  A +P  PPA   + VI+ A+PP
Sbjct: 53  PPTTTTPPVSAAQPPASPVTPPPAVTPTSPPAPKVAPVISPATPP 97


>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 699

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 213 PTSYMRGPPESPLHASSPGLPPAHSCSLVITSASPP 106
           P   +  PP  P+++  P  PP HS    + S  PP
Sbjct: 543 PPPPVHSPPPPPVYSPPPPPPPVHSPPPPVFSPPPP 578


>At3g09780.1 68416.m01161 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 775

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = -3

Query: 353 CSHYFRLLLYFLSMVCTRKRSYIRRGCSLCRNIS 252
           CSH F     FLS  CT     I   CSLC+N S
Sbjct: 388 CSHGF-----FLSSSCTANSDRICTPCSLCQNSS 416


>At3g24480.1 68416.m03070 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 494

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/50 (30%), Positives = 19/50 (38%)
 Frame = -2

Query: 282 PGMFLVPQYFGP*LTDPTITKVLPTSYMRGPPESPLHASSPGLPPAHSCS 133
           P   L P  + P  + P  +          PP   +H SSP  PP H  S
Sbjct: 416 PSPPLPPPVYSPPPSPPVFSPPPSPPVYSPPPPPSIHYSSPPPPPVHHSS 465


>At1g79480.1 68414.m09263 hypothetical protein low similarity to
           beta-1,3-glucanase-like protein GI:9758115 from
           [Arabidopsis thaliana]
          Length = 356

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -3

Query: 593 YVSLRSLGVP*NLPPVCATHP 531
           YVSL  L VP N PP C   P
Sbjct: 46  YVSLPPLSVPGNAPPFCINPP 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,750,666
Number of Sequences: 28952
Number of extensions: 292695
Number of successful extensions: 951
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)