Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_G06
(611 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 60 2e-09
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 51 9e-07
SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0) 35 0.045
SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.32
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 31 0.56
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.56
SB_37977| Best HMM Match : PP2C (HMM E-Value=8.6e-08) 30 1.3
SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0) 30 1.3
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32) 29 3.9
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 28 5.2
SB_37164| Best HMM Match : Prion_octapep (HMM E-Value=9.2) 28 6.9
SB_47365| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_45040| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/87 (33%), Positives = 44/87 (50%)
Frame = +1
Query: 271 ECTKAIFKGGSLSNAYRGVWAPLGGIAAINAMVFGAYGNTRRAMPNPDSLXXXXXXXXXX 450
+C K I K S+ Y+G+ +PL G+ INA++FG G T R + N
Sbjct: 196 DCFKQIIKRESVLGLYKGMASPLAGLGLINAIIFGVQGETLRRL-NGSGTMAQAISGAIA 254
Query: 451 XXLQSFACAPVELVKTRQQLAKPSERM 531
+QS C P+EL KTR Q+ +++
Sbjct: 255 GGVQSIVCCPMELAKTRVQVQGQGQKL 281
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 50.8 bits (116), Expect = 9e-07
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 7/136 (5%)
Frame = +1
Query: 220 PLDTLKVHIQSGRGS-PLECTKAIFKGGSLSNAYRGVWAPLGGIAAINAMVFGAYGNTRR 396
PLDT+KV +Q+ G+ PL+ K + Y+G+ AP+ A + A+ F + +R
Sbjct: 89 PLDTIKVRLQASFGAGPLDMLARTVKTEGVRGLYKGMLAPVLVAAPVTAVSFYSLSIGKR 148
Query: 397 AM---PNPD-SLXXXXXXXXXXXXLQSFACAPVELVKTRQQLAKPS--ERMPSGAWAGAR 558
PN + ++ SF AP E VK Q+ K S + G
Sbjct: 149 LQLSDPNKEPTMVQYYNAGVFCGVCVSFIYAPTERVKCLLQVQKESGTKARYQGLGDCLL 208
Query: 559 YILKTGGYKGLFRGLG 606
+ +TGG +G+F+GLG
Sbjct: 209 QVYRTGGLRGVFKGLG 224
>SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 43.6 bits (98), Expect = 1e-04
Identities = 41/165 (24%), Positives = 59/165 (35%), Gaps = 17/165 (10%)
Frame = +1
Query: 160 MAMDFXXXXXXXXXXXXXXHPLDTLKVHIQ---SGRGSPLECTKAIFKGGSLSNAYRGVW 330
MA DF P DT+KV +Q S + L+C FK Y G
Sbjct: 9 MATDFTAGAMGGTACVFAGQPFDTIKVKMQTFPSMSKNALDCGIKTFKQEGFKGLYAGTI 68
Query: 331 APLGGIAAINAMVFGAYGN--------TRRAMPNPDSLXXXXXXXXXXXXLQSFACAPVE 486
L A N+ +F YG T + + ++ SF P E
Sbjct: 69 PSLAANIAENSFLFLFYGQCLSLIKTLTGKKHESELTIFHNACAGSGAAFFMSFVLCPAE 128
Query: 487 LVKTRQQLAKPSERM------PSGAWAGARYILKTGGYKGLFRGL 603
L+K R Q + + SG I++ G++GLFRG+
Sbjct: 129 LIKCRLQAQHQTNLISGMAGPKSGVIDVTMQIIRNDGFQGLFRGM 173
>SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 37.9 bits (84), Expect = 0.006
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Frame = +1
Query: 265 PLECTKAIFKGGSLSNAYRGVWAPLGGIAAINAMVFGAYGNTRRAMPNPDS-LXXXXXXX 441
P++C K KG + YRG+ + L G ++ F + + M + + L
Sbjct: 82 PIDCVKKTVKGHGVLGLYRGLSSLLYGSVPKASVRFAVFEYLKNKMADENGKLTQFQTLA 141
Query: 442 XXXXXLQSFACA---PVELVKTR--QQLAKPSERMPSGAWAGARYILKTGGYKGLFRGL 603
S A P+E +K + +P+ + G ++G R ILKT G+ G+++GL
Sbjct: 142 SGLGAGVSEAVVVVCPMETIKVKFIHDQTQPNPKY-KGFFSGVRTILKTEGFFGVYKGL 199
>SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 309
Score = 35.1 bits (77), Expect = 0.045
Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 15/143 (10%)
Frame = +1
Query: 220 PLDTLKVHIQS------GRGSP----LECTKAIFKGGSLSNAYRGVWAPLGGIAAINAMV 369
PLD LKV +Q+ G +P ++C + L Y+G+ +PL A+
Sbjct: 40 PLDLLKVRLQAMNQVKPGETAPFKGAMDCFMKTVRLEGLRGLYKGMLSPLLMATPSTALT 99
Query: 370 FGAYGNTRRA-MPNP---DSLXXXXXXXXXXXXLQSFACAPVELVKTRQQL-AKPSERMP 534
F + +R + +P +L SF AP E +K Q+ A S
Sbjct: 100 FYSLSVGKRIQLSDPYQEPTLVQYGNAGLFCGFCVSFLFAPAERIKCILQVEAGASGSTQ 159
Query: 535 SGAWAGARYILKTGGYKGLFRGL 603
SG +A + I G +G+FRGL
Sbjct: 160 SGPYAIVKRIYAEEGVRGIFRGL 182
>SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 313
Score = 32.3 bits (70), Expect = 0.32
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Frame = +1
Query: 217 HPLDTLKVHIQS-GRGSP---------LECTKAIFKGGSLSNAYRGVWAPLGGIAAINAM 366
HPLDT+KV +Q+ R P +C + Y+G+ AP+ G+ I A+
Sbjct: 45 HPLDTIKVRLQTMPRPKPGEKPMFTGTFDCAMKTIRNEGFFGLYKGMAAPITGVTPIFAI 104
Query: 367 VFGAYGNTRRAM---PNPD 414
F + ++ PN D
Sbjct: 105 CFWGFNMGKKLQMKDPNAD 123
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 31.5 bits (68), Expect = 0.56
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 478 PVELVKTRQQLAKPSERMP-SGAWAGARYILKTGGYKGLFRGL 603
P+++V+ R Q+ + S W G + I+++ G+ GLF+G+
Sbjct: 701 PLDVVRRRMQMERGEGMFKYSSTWDGFKVIVRSEGFIGLFKGM 743
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 31.5 bits (68), Expect = 0.56
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 13/142 (9%)
Frame = +1
Query: 217 HPLDTLKVHI---QSGR-GSPLECTKAIFKGGSLSNAYRGVWAPLGGI---AAINAMVFG 375
+PL+ LK + ++G+ L I++ + + YRG++ L GI A I+ V+
Sbjct: 249 YPLEVLKTRLAIRKTGQYRGLLHAASVIYQKEGIRSFYRGLFPSLLGIIPYAGIDLAVYE 308
Query: 376 A----YGNTRRAMPNPDSLXXXXXXXXXXXXLQSFACAPVELVKTRQQLAKPSERMPSG- 540
Y N + + A P+ LV+TR Q + G
Sbjct: 309 TLKNFYLNYHKNQSADPGVLVLLACGTASSTCGQLASYPLSLVRTRLQAQAREKGGGQGD 368
Query: 541 -AWAGARYILKTGGYKGLFRGL 603
+ R I+ G+KGL+RGL
Sbjct: 369 NMVSVLRKIITEDGFKGLYRGL 390
>SB_37977| Best HMM Match : PP2C (HMM E-Value=8.6e-08)
Length = 662
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 226 DTLKVHIQSGRGSPLECTKAI 288
++L VH+ GRG L CTKA+
Sbjct: 262 NSLDVHVSEGRGDRLSCTKAV 282
>SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 612
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = +1
Query: 457 LQSFACAPVELVKTRQQLAKPSERMPSGAWAGARYILKTGGYKGLFRGL 603
+ S P ++VKTR Q+ P PS A I++ GG +GLFRGL
Sbjct: 536 MASVVTQPADVVKTRLQM-NPY-MYPSNR-AAVVAIIEAGGIEGLFRGL 581
>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
Length = 905
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 411 GLADDSRNRWSSCRGTT 461
G+ +DSRNRWS C T
Sbjct: 635 GVDEDSRNRWSGCSAVT 651
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 28.3 bits (60), Expect = 5.2
Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 14/144 (9%)
Frame = +1
Query: 220 PLDTLKVHIQS----GRGSP------LECTKAIFKGGSLSNAYRGVWAPLGGIAAINAMV 369
PLDT+KV +Q+ G P +C I + + +RGV P+ ++
Sbjct: 58 PLDTIKVRLQAMPLPKPGEPWMYKNSFDCFFKIIRNEGVYYLFRGVTVPILNSIPNTTVL 117
Query: 370 FGAYG---NTRRAMPNPDSLXXXXXXXXXXXXLQSFACAPVELVKTRQQLAKPSERMPSG 540
F + + + L SF P++ VK Q+ K G
Sbjct: 118 FSCVSFVKSYKLPVSKDPELLRSLAAGMIAGVATSFVLTPLDRVKCILQIEKAFGGSSYG 177
Query: 541 AWAGA-RYILKTGGYKGLFRGLGI 609
R I + G +G+++G+ +
Sbjct: 178 GPVDCLRRIYREAGVRGVYKGISV 201
>SB_37164| Best HMM Match : Prion_octapep (HMM E-Value=9.2)
Length = 207
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 327 MGTFRRYSGNKRYG-VWSLWEYSSSNA*PGLADDSRNRWSS 446
MGT Y + +G W L E S + GL +RN W+S
Sbjct: 1 MGTSETYRRKQEHGDKWDLQEESGTWGQVGLTGGNRNMWTS 41
>SB_47365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 648
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 354 NKRYGVWSLWEYSSSNA*PGLADDSRNRWSSCRGTT 461
NK+Y + Y ++ PG N+WSSCR T
Sbjct: 139 NKKYYMRCTTSYCYRDSCPGDTVFKSNKWSSCRSMT 174
>SB_45040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = -3
Query: 561 VPGA--SPCAGRHTFTRFCELLTSFNQLDRCTRKAL*CPCNCSSGCVSRQRVRVRHCSTS 388
+PG PCAGR+ T CE L Q T L +C C R R R C+
Sbjct: 256 IPGVMGKPCAGRNVNTEKCE-LKPCPQDGGFTEWGL--FGDCDKSCGGGARTRKRECTNP 312
Query: 387 IP 382
P
Sbjct: 313 AP 314
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,464,664
Number of Sequences: 59808
Number of extensions: 437508
Number of successful extensions: 1108
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -