Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_G04
         (626 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54670.1 68418.m06807 kinesin-like protein C (KATC)                 30   1.1  
At5g28930.1 68418.m03578 hypothetical protein various predicted ...    29   1.9  
At4g04700.1 68417.m00690 calcium-dependent protein kinase, putat...    29   3.3  
At3g26230.1 68416.m03272 cytochrome P450 family protein contains...    29   3.3  
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a...    28   4.4  

>At5g54670.1 68418.m06807 kinesin-like protein C (KATC)
          Length = 754

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 22/63 (34%), Positives = 36/63 (57%)
 Frame = +2

Query: 161 MQLYNSVIVSDYKAAVKTTFQLEKECRSDVISSVVNKLLLEGQPNVVEYAYSLWYRSGED 340
           +QLYNS +  D   A +T  + EKE R+ +I ++ N   L+GQ + ++   +    S ED
Sbjct: 208 LQLYNSKLQGDLDEAHETIKRGEKE-RTAIIENIGN---LKGQFSALQEQLAASKASQED 263

Query: 341 IVK 349
           I+K
Sbjct: 264 IMK 266


>At5g28930.1 68418.m03578 hypothetical protein various predicted
           proteins, Arabidopsis thaliana
          Length = 509

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 152 DPVMQLYNSVIVSDYKAAVKTTFQLEKECRSDV 250
           D V+  YNSV V D ++   T F  EKE + DV
Sbjct: 286 DDVVSFYNSVDVPDGQSCGGTNFNNEKEFQGDV 318


>At4g04700.1 68417.m00690 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase [Nicotiana tabacum] gi|3283996|gb|AAC25423;
           contains protein kinase domain, Pfam:PF00069
          Length = 485

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 197 KAAVKTTFQLEKECRSDVISSVVNKLLLEGQPNVVEYAYSLWYRSGEDIVKVY 355
           K  +KT  + ++EC  DV   +     L G+PN+VE+  +   +    IV  Y
Sbjct: 57  KTILKTKLK-DEECEEDVKREIRIMKQLSGEPNIVEFKNAYEDKDSVHIVMEY 108


>At3g26230.1 68416.m03272 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 498

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
 Frame = +2

Query: 179 VIVSDYKAAVKTTFQLEKECRSDVISSVVNKLLLEGQP-NVVEYAYSLWYRSGEDIVKVY 355
           V++S  +AA +     + EC +  I++V +KL  +GQ   +  Y  SL        +K +
Sbjct: 71  VVISSTEAAEEALKVHDLECCTRPITNVTSKLWRDGQDIGLAPYGESLRELRKLSFLKFF 130

Query: 356 FPIE---FRLLFNEDPVLITNKRDELALK 433
              +   FR +  E+  L+  K  E ALK
Sbjct: 131 STTKVRSFRYIREEENDLMVKKLKEAALK 159


>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
           almost identical to Lon protease homolog 2
           mitochondrial precursor SP:P93655, GI:1848290 from
           [Arabidopsis thaliana]
          Length = 940

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 382 KQQSKLYRKVNFDYVLTGSVPETVSVFDD 296
           KQ  K+YRK+    V  G+VPE  +V  D
Sbjct: 655 KQIEKIYRKIALKLVREGAVPEEPAVASD 683


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,896,472
Number of Sequences: 28952
Number of extensions: 225261
Number of successful extensions: 533
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)