Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_G02
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    42   6e-05
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    40   3e-04
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    37   0.003
SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c...    27   2.0  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    27   2.6  
SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc...    26   6.0  
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    25   7.9  
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    25   7.9  

>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +2

Query: 263 YPANTYAIHIVNNSWIFDKIYNIFKPLLDNVMRSKIYFHGSDLTS-LHKHIDPDHLPERY 439
           YP      +++N  W F   +N+ K  LD     KI+  GS+  S L + I  D+LP + 
Sbjct: 200 YPERMGKFYVINAPWGFSSAFNLIKGFLDEATVKKIHILGSNYKSALLEQIPADNLPAKL 259

Query: 440 GG 445
           GG
Sbjct: 260 GG 261


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
 Frame = +2

Query: 92  EDLFKATILALELGMLEPRTQILGGVALFDLQDLGTQHAWQCTPSVAAKIVKILVSCYPA 271
           E + + T+  +E   L  +  I     +FD+ D    +           ++K   + YP 
Sbjct: 211 ESVERLTVWVMETARLILKPPIETATVVFDMTDFSMSNM---DYGPLKFMIKCFEAHYPE 267

Query: 272 NTYAIHIVNNSWIFDKIYNIFKPLLDNVMRSKIYFHGSDLTSLHKHIDPDHLPERYGGIW 451
                 +    W+F  +++I K  LD V+ SK+ F   +   L ++I+PD++ + +GG  
Sbjct: 268 CLGECIVHKAPWLFQGVWSIIKSWLDPVVVSKVKF-TRNYRDLQQYINPDNILKEFGGPN 326

Query: 452 P-DYSY 466
           P  Y+Y
Sbjct: 327 PWRYTY 332


>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
 Frame = +2

Query: 242 VKILVSC----YPANTYAIHIVNNSWIFDKIYNIFKPLLDNVMRSKIYFHGSDLTSLHKH 409
           VK L SC    YP +     +  + WIF  ++NI K  +   + +KI F  S    L K+
Sbjct: 221 VKYLASCLEYYYPQSLGVCILHKSPWIFRSVWNIIKGWIKPEIAAKIVFTQS-ANDLEKY 279

Query: 410 IDPDHLPERYGG 445
           ID   +P   GG
Sbjct: 280 IDYSVIPTSLGG 291


>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 429

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 287 HIVNNSWIFDKIYNIFKPLLDNVMRSKIYFHGSDLTSLHKHID 415
           +IV+ S+++   YN+FK  L  +  +  + +G D   L   ID
Sbjct: 104 NIVSTSYLYGGTYNLFKVTLPRLGITTKFVNGDDPNDLAAQID 146


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +2

Query: 314 DKIYNIFKPLLDNVMRSKIYFHGSDLTSLHKHIDPDHLPERYGGIWPDYSYTI 472
           DK + I + + D ++R   +  G  L    +HI   H  ++YG   PD  + +
Sbjct: 261 DKPHEIMEVVEDLLVRLVSFAKGITLAKPFQHITYQHAIDKYGSDKPDIRFEL 313


>SPBC3B9.06c |apg3||autophagy associated protein Apg3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 275

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 99  YLKRRY*LWSWECWNLARKYL 161
           YL  ++  WSWEC +  R +L
Sbjct: 42  YLVSKFPTWSWECGDRIRGFL 62


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +1

Query: 151 ANTWWRCFVRFARPWHPACLAVHPI 225
           A+++W+ F+++   W+ A   +H I
Sbjct: 239 AHSFWKEFIQYGATWYTAVPTIHQI 263


>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/46 (28%), Positives = 18/46 (39%)
 Frame = -2

Query: 284 SHRCSLGNMTLKF*QFLLQLMGCTAKHAGCQGLANRTKQRHQVFAC 147
           +H C     ++      L  MG     AGC+ +    K RH   AC
Sbjct: 383 AHGCPYRTYSVNNLVSALASMGIAPDSAGCREVVEAVKARHYHIAC 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,320
Number of Sequences: 5004
Number of extensions: 65827
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)