Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_G02
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38379| Best HMM Match : GspM (HMM E-Value=1.4)                      31   0.68 
SB_39062| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_35569| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_8945| Best HMM Match : ABC-3 (HMM E-Value=0.26)                     29   4.8  
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)                     28   8.4  

>SB_38379| Best HMM Match : GspM (HMM E-Value=1.4)
          Length = 697

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +3

Query: 120 LWSWECWNLARKYLVALLCSICKTLAPSMLGSAPHQLQQKLLKF*CHVTQRTP-MRYISS 296
           +W  +  N+ARK L AL  S C  L    + S      +K     C++TQ T    ++  
Sbjct: 86  IWGSKIRNIARKSLFALWTSFCSDLQHLFITSYYFNRIEKPWNLVCNLTQLTSGHNFLKD 145

Query: 297 ITLGYSIKSTT 329
           I + +S+   T
Sbjct: 146 IVVAFSVLIAT 156


>SB_39062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 256

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = +2

Query: 323 YNIFKPLLDNVMRSKIYFHGSDLTSLHKHIDPDHLPERYGGIWPDYSYTIWFESLRKNVY 502
           Y  FKP   N+   ++   GS   +  + I      ERY G+W ++  + WFE L     
Sbjct: 81  YPDFKP---NLTPKEVMQAGSFGGTYFRPISSAITGERYSGVWKEFP-SDWFEGLTIGTQ 136

Query: 503 VAKEMIN 523
           VA    N
Sbjct: 137 VASSKYN 143


>SB_35569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 497 VYVAKEMINCGYKFREEEINPDVVRQLKEEG 589
           +YV++E+ NCGY+  +E    +++RQL   G
Sbjct: 1   MYVSREVQNCGYEIGDE---GNIIRQLNSNG 28


>SB_8945| Best HMM Match : ABC-3 (HMM E-Value=0.26)
          Length = 555

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
 Frame = +2

Query: 98  LFKATILALELGMLEPRTQILG---GVALFDLQDLGTQHAWQCTPSVAAKIVKILVSCYP 268
           +F  TIL L L  ++PR +++    G  L    ++       C   V   I+ I++   P
Sbjct: 396 IFGTTILVLLLNTVDPRLRLISYPIGQMLSSCGNMSGSPLRMCMARVIIIIIIIIIIIIP 455

Query: 269 --ANTYAIHIVNNSWIFDKIYNIFKP 340
             A+ Y   I +  +I D +Y  ++P
Sbjct: 456 SIASLYLFPIASPGFIAD-VYGSYRP 480


>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 1023

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 189 SCKSNKATPPSICVRGSNIP--NSRASIVALNKSSMGITLGSQQPIL 55
           SCK   AT PSIC + +NI   N   +   L + +  + +G  + +L
Sbjct: 44  SCKIPAATFPSICDKDTNIKSVNMIITFKTLQQQTFKVEIGEDETVL 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,311,653
Number of Sequences: 59808
Number of extensions: 478561
Number of successful extensions: 1026
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)