Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_G01
(453 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0) 131 3e-31
SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40) 32 0.26
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006) 30 0.78
SB_39190| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_9168| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 28 3.1
SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_40632| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 28 4.2
SB_32076| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 27 5.5
SB_49663| Best HMM Match : TolA (HMM E-Value=0.059) 27 5.5
SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3) 27 5.5
SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 27 9.6
>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
Length = 157
Score = 131 bits (316), Expect = 3e-31
Identities = 64/102 (62%), Positives = 81/102 (79%)
Frame = +1
Query: 148 VFKMSTKILKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSII 327
+F S KI+K + FE ISQA++ELE NSD+KAQLRELYI+ AKEI++ KK+II
Sbjct: 4 MFTASAKIVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAII 63
Query: 328 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVXVGDRKILAK 453
I+VP+P+++AFQKIQ RLVRELEKKFSGKHVV V R+IL +
Sbjct: 64 IFVPVPQIRAFQKIQTRLVRELEKKFSGKHVVIVAQRRILPR 105
>SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40)
Length = 1198
Score = 31.9 bits (69), Expect = 0.26
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Frame = -1
Query: 279 VQFPQL-SLQVRVSLKFNKSLRDRSLEGVGFYSTRFEDF-----RTHLEYSTGEKEIVIE 118
V+FP+ +Q +SL +++ + G Y+ D+ +EY G+K + I+
Sbjct: 872 VKFPRFYRVQGTLSLPYDEIVEPFEAWYAGDYNMSRIDYYYGKVNARIEYYYGKKNVRID 931
Query: 117 YYQLRCN*KIVFYYVRIN 64
YY + N +I FYY + N
Sbjct: 932 YYYRKRNARIDFYYSKRN 949
>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
Length = 1552
Score = 30.3 bits (65), Expect = 0.78
Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = +1
Query: 151 FKMSTKILKAGAIEP---DTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKS 321
++ K ++ G + P + ++T ++ L + L+ +RELY +E E KKS
Sbjct: 153 YQFMKKCVQEGPVTPMAQEQWDTILTMIPARLVQSPQLQPYIRELYAEVKQEYEASIKKS 212
Query: 322 IIIYVPM-PKLKAFQ 363
++ ++ + PK+K +
Sbjct: 213 MVQHILVKPKVKGVE 227
>SB_39190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 29.9 bits (64), Expect = 1.0
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 162 THLEYSTGEKEIVIEYYQLRCN*KIVFYYVRIN 64
+ ++Y G+K + I+YY + N +I FYY + N
Sbjct: 100 SRIDYYYGKKNVRIDYYYRKRNARIDFYYSKRN 132
>SB_9168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 46 LLLCRYIYPYIVENDFLVATKLVIFYNYLFLSRRVFKMSTKIL 174
+LLC ++PY N +ATK+++ Y L V ++TK+L
Sbjct: 68 VLLCYVMFPYS-SNMLTLATKVLLCYVMLPYPSNVLALATKVL 109
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 28.3 bits (60), Expect = 3.1
Identities = 20/91 (21%), Positives = 41/91 (45%)
Frame = +1
Query: 172 LKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 351
LKA T ET S E E ++ RE+ + ++ H+++ + L
Sbjct: 35 LKASQFRKLTRETGASVLRNERERSAKRAQAFREISPSSPQDRRKHSERRPFLATECDNL 94
Query: 352 KAFQKIQIRLVRELEKKFSGKHVVXVGDRKI 444
+ +K + +++RE+ KK + +G+ +I
Sbjct: 95 QEAEKWRHQIIREVAKKVAQIQNAGLGEFRI 125
>SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 380
Score = 27.9 bits (59), Expect = 4.2
Identities = 20/93 (21%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Frame = +1
Query: 199 TFETSISQALVELETNSDLKAQLRELYITKAKEI-----ELHNKKSIIIYVPMPKLKAFQ 363
T + Q E++T+ + K +RE ITK K + E +++++ + K+
Sbjct: 241 TLSDAAKQCSTEIKTSENKKMTIREDMITKRKHVRDRRREHREEETVLRKDELDKVAKLY 300
Query: 364 KIQIRLVRELEKKF---SGKHVVXVGDRKILAK 453
+ + + +RE+E++F K+ + +R++ A+
Sbjct: 301 EEEKQDLREMEQEFQNMEAKYNAILEERRLAAE 333
>SB_40632| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 353 RHSKRSKSGLSVS*KRSSAVSMLC 424
RH RS+S L + K+S AV++LC
Sbjct: 574 RHRSRSRSRLEIVSKKSPAVNVLC 597
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 27.9 bits (59), Expect = 4.2
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Frame = +1
Query: 238 ETNSDLKAQLRE----LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 402
E N+ LK +L E L +T+ +E E+ N K + +YV M KL++ Q ELEK+
Sbjct: 1699 EDNAILKRKLDEKETALKVTQDREREM-NDKLMALYVNMSKLESTQGTLEEKNAELEKE 1756
>SB_32076| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 2352
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = -1
Query: 267 QLSLQVRVSLKFNKSLRDRSLEGVGFYSTRFEDFRTHLEYSTGE 136
QL+L V L+F+ + R++ +G Y T +++ +HL + E
Sbjct: 1148 QLNLAVWGFLRFHVNFTTRNVHVIGGYDTAADEYPSHLNLFSDE 1191
>SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)
Length = 591
Score = 27.5 bits (58), Expect = 5.5
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 196 DTFETSISQALVELETNSDLKAQLRELYITKAKE-IELHNKKSIII 330
+T + + + +LE D KAQL EL + KAKE L KS +
Sbjct: 224 ETLQEQEKETIQQLE--EDFKAQLNELEVEKAKEQTALEEMKSFTV 267
>SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)
Length = 151
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/26 (42%), Positives = 21/26 (80%)
Frame = +1
Query: 334 VPMPKLKAFQKIQIRLVRELEKKFSG 411
VP+P++ A QK++ +L R++E+K +G
Sbjct: 69 VPLPQVSAMQKVKGKL-RDMEQKLNG 93
>SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1801
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 52 LCRYIYPYIVENDFLVATKLVIFYNYLFLSRRVFKMSTK 168
LC+++ P +V L T + + + LSRR FK T+
Sbjct: 368 LCKHLGPELVNEGLLCLTAMCQTQDLIELSRRSFKSLTR 406
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +1
Query: 334 VPMPKLKAFQKIQIRLVRELEKKFSG 411
VP+P+++A QK++ L R +E+K +G
Sbjct: 190 VPLPQVRAMQKVKGEL-RNMEQKLNG 214
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,617,072
Number of Sequences: 59808
Number of extensions: 227654
Number of successful extensions: 613
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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