Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_G01
         (453 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    27   0.072
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.6  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   4.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   4.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   4.7  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   6.3  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   8.3  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 27.5 bits (58), Expect = 0.072
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 196 DTFETSISQALVELETNSDLKAQLRE 273
           +T  T++S AL EL  N D++ +LRE
Sbjct: 307 ETSSTTMSNALYELALNQDVQKKLRE 332


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 187 IEPDTFETSISQALVELETNSDLKAQLRELYITKAKE 297
           + P+TF   ++   V++  N     +L  L +TK  E
Sbjct: 632 VRPNTFTDKVNLTRVDMYANMIETMELTSLLLTKVAE 668


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -2

Query: 404 NFFSNSRTSLIWIFWNAFS 348
           + F+   T  +W+FW +F+
Sbjct: 210 DIFAMIGTIFLWLFWPSFN 228


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 275 CTLPRPRKLNFITKNQLS 328
           C LPRP+  N     +LS
Sbjct: 628 CLLPRPKSENNFASQELS 645


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 275 CTLPRPRKLNFITKNQLS 328
           C LPRP+  N     +LS
Sbjct: 596 CLLPRPKSENNFASQELS 613


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 183 TRFEDFRTHLEYSTGEK 133
           TR    +TH+   TGEK
Sbjct: 20  TRDHHLKTHMRLHTGEK 36


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 112 PASLQLKNRFLLCTDKCTDTII 47
           P  L+L +  L+C +K + TI+
Sbjct: 65  PDGLKLLSDGLMCVEKVSTTIV 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,954
Number of Sequences: 438
Number of extensions: 2350
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)