Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_G01
(453 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 98 2e-21
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 98 2e-21
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 94 5e-20
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 85 2e-17
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 85 2e-17
At4g30030.1 68417.m04273 aspartyl protease family protein contai... 31 0.36
At4g15710.1 68417.m02391 hypothetical protein 28 2.6
At4g11610.1 68417.m01859 C2 domain-containing protein contains I... 27 4.5
At5g06850.1 68418.m00774 C2 domain-containing protein contains I... 27 7.8
At1g27920.1 68414.m03421 microtubule associated protein (MAP65/A... 27 7.8
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 98.3 bits (234), Expect = 2e-21
Identities = 48/102 (47%), Positives = 73/102 (71%), Gaps = 2/102 (1%)
Frame = +1
Query: 148 VFKMSTKILKAGAIEPDTFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKS 321
++ KI K + P FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+
Sbjct: 1 MYSGQNKIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKA 60
Query: 322 IIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVXVGDRKIL 447
++IYVP KAF+KI +RLVRELEKKFSGK V+ V R+I+
Sbjct: 61 VVIYVPFRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIM 102
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 98.3 bits (234), Expect = 2e-21
Identities = 48/102 (47%), Positives = 73/102 (71%), Gaps = 2/102 (1%)
Frame = +1
Query: 148 VFKMSTKILKAGAIEPDTFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKS 321
++ KI K + P FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+
Sbjct: 1 MYSGQNKIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKA 60
Query: 322 IIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVXVGDRKIL 447
++IYVP KAF+KI +RLVRELEKKFSGK V+ V R+I+
Sbjct: 61 VVIYVPFRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIM 102
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 93.9 bits (223), Expect = 5e-20
Identities = 49/102 (48%), Positives = 70/102 (68%), Gaps = 2/102 (1%)
Frame = +1
Query: 148 VFKMSTKILKAGAIEPDTFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKS 321
+F KI K EP E ++QAL +LE TN +LK++L++LYI +A +++ N+K+
Sbjct: 1 MFSAQNKIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKA 60
Query: 322 IIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVXVGDRKIL 447
++IYVP KAF+KI RLVRELEKKFSGK V+ V R+I+
Sbjct: 61 VVIYVPFRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIM 102
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 85.4 bits (202), Expect = 2e-17
Identities = 41/102 (40%), Positives = 68/102 (66%), Gaps = 2/102 (1%)
Frame = +1
Query: 148 VFKMSTKILKAGAIEPDTFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKS 321
+F KI K +E + ++QA +LE TN +LK++L++LY+ A ++++ +K+
Sbjct: 1 MFSAQHKIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKA 60
Query: 322 IIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVXVGDRKIL 447
I++ VP KA++KI +RLVRELEKKFSGK V+ + R+I+
Sbjct: 61 IVVNVPYRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV 102
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 85.4 bits (202), Expect = 2e-17
Identities = 41/102 (40%), Positives = 68/102 (66%), Gaps = 2/102 (1%)
Frame = +1
Query: 148 VFKMSTKILKAGAIEPDTFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKS 321
+F KI K +E + ++QA +LE TN +LK++L++LY+ A ++++ +K+
Sbjct: 1 MFSAQHKIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKA 60
Query: 322 IIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVXVGDRKIL 447
I++ VP KA++KI +RLVRELEKKFSGK V+ + R+I+
Sbjct: 61 IVVNVPYRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV 102
>At4g30030.1 68417.m04273 aspartyl protease family protein contains
Pfam domain, PF00026: eukaryotic aspartyl protease
Length = 424
Score = 31.1 bits (67), Expect = 0.36
Identities = 21/67 (31%), Positives = 31/67 (46%)
Frame = +1
Query: 103 TKLVIFYNYLFLSRRVFKMSTKILKAGAIEPDTFETSISQALVELETNSDLKAQLRELYI 282
T L IF + +L + K+L IEP TF+ SQ ++T RE Y
Sbjct: 253 TPLQIFQDRYYLDLQAISFGEKLLD---IEPGTFQRYRSQGGTVIDTGCSPTILAREAYE 309
Query: 283 TKAKEIE 303
T ++EI+
Sbjct: 310 TLSEEID 316
>At4g15710.1 68417.m02391 hypothetical protein
Length = 141
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = -1
Query: 318 FFVMKFNFLGLGNVQFPQLSLQVRVSLKFNKSLRDRSLEGVGFYS 184
FF MKF + G G++ + + +L++R +L + ++RD + V +S
Sbjct: 89 FFAMKFEWAGEGDLDYTRSNLELR-TLLIDAAMRDHDDDYVRAWS 132
>At4g11610.1 68417.m01859 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1011
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 46 LLLCRYIYPYIVENDFLVATKLVIFYNYLFLSRRVFKMSTKILKAGAIEPDTFE 207
L L P ++ + L+ +NY F R M+TKI +A A+ PD +
Sbjct: 844 LFLMLVCLPELILPTMFLYMFLIGLWNYRFRPRYPPHMNTKISQAEAVHPDELD 897
>At5g06850.1 68418.m00774 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 669
Score = 26.6 bits (56), Expect = 7.8
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Frame = +1
Query: 46 LLLCRYIYPYIVENDFLVATKLVIFYNYLFLSRRVFKMSTKILKAGAIEP-------DTF 204
+L+C YP ++ + L+ +N+ F R M TK+ A A P DTF
Sbjct: 505 ILIC---YPELILPTTFLYMFLIGLWNFRFRPRHPAHMDTKVSWAEAASPDELDEEFDTF 561
Query: 205 ETSISQALVEL 237
TS Q +V++
Sbjct: 562 PTSKGQDVVKM 572
>At1g27920.1 68414.m03421 microtubule associated protein
(MAP65/ASE1) family protein low similarity to protein
regulating cytokinesis 1 (PRC1) [Homo sapiens]
GI:2865521; contains Pfam profile PF03999: Microtubule
associated protein (MAP65/ASE1 family)
Length = 592
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 214 ISQALVELETNSDLKA-QLRELYITKAKEIE 303
I QA E++ LKA +++EL+I K KE+E
Sbjct: 333 IQQAEAEVKRLDQLKASRIKELFIKKQKELE 363
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,893,107
Number of Sequences: 28952
Number of extensions: 164119
Number of successful extensions: 417
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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