Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_F24
(217 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480 28 0.89
08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587... 27 1.6
02_05_1134 - 34352154-34352375,34353683-34353746,34353820-343548... 27 2.1
08_01_0315 - 2780657-2780704,2781555-2781608,2781826-2781976,278... 25 8.3
07_01_0764 + 5860571-5860780,5860865-5860996,5861082-5861252,586... 25 8.3
06_02_0150 + 12295592-12295773,12295874-12295976,12296061-122963... 25 8.3
06_01_1042 + 8187536-8187616,8187713-8188315 25 8.3
04_01_0182 - 2058396-2058456,2058623-2058660,2058748-2058850,205... 25 8.3
03_02_0903 + 12285874-12285918,12286715-12286820,12286906-122869... 25 8.3
02_02_0522 - 11161385-11161537,11162513-11162668,11164176-111642... 25 8.3
01_06_1278 + 35939392-35939463,35939546-35939819,35939910-359400... 25 8.3
>01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480
Length = 623
Score = 28.3 bits (60), Expect = 0.89
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -1
Query: 67 YWRRSVRTSRWYSREDTLSYV 5
YW+ +++TS WY++ T S+V
Sbjct: 475 YWQPTMKTSDWYTKSCTYSWV 495
>08_02_1091 +
24256025-24256190,24256806-24257978,24258066-24258733,
24258994-24260065,24260241-24260563,24260647-24260835,
24261400-24261506,24262103-24262163,24262617-24262634
Length = 1258
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +1
Query: 10 KKACLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKD 138
++AC +C+N + C + +P S G + + N NC D
Sbjct: 729 QQACASNCSNKELGEKCIHDDPGQPVSDGHIPLQNGDNCADFD 771
>02_05_1134 - 34352154-34352375,34353683-34353746,34353820-34354859,
34355193-34355261,34355502-34355606,34355992-34356161,
34356244-34356351,34356397-34356525,34356577-34356681,
34357186-34357475,34357575-34357679,34358195-34358289,
34358474-34358569,34358660-34358782,34359120-34359174,
34359254-34359417,34359881-34359971,34360180-34360334,
34360823-34361002,34361314-34361487,34361776-34361917,
34362023-34362325,34362443-34362522
Length = 1354
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 209 CSLN*ERRIPSEPAHSPSPTFR 144
CS +R PS PA PSP F+
Sbjct: 1287 CSAEWRKRWPSPPARQPSPGFK 1308
>08_01_0315 -
2780657-2780704,2781555-2781608,2781826-2781976,
2782650-2782888,2783141-2783272,2783594-2783658,
2784289-2784377,2784664-2784902
Length = 338
Score = 25.0 bits (52), Expect = 8.3
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -2
Query: 150 FPQCIFVFTVIIIHDTNAAKGLRFLSVLTGADRFELHVGTVVKTRFLTC 4
+P C ++T II H +NA+ + + +TG H T V T F C
Sbjct: 62 YPNCNIIYTDIIFHHSNAS---TYNNEITGHG----HDTTGVPTSFTQC 103
>07_01_0764 +
5860571-5860780,5860865-5860996,5861082-5861252,
5861345-5861365,5861457-5861972,5862008-5862301
Length = 447
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +1
Query: 22 LHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGECAGSDG 183
+ DCTNV+ + + G P + G + + + N + K GD + DG
Sbjct: 205 VEDCTNVRISGLTITAPGTSPNTDG-IHITRSKNVQVTGCTIKTGDDCMSIEDG 257
>06_02_0150 +
12295592-12295773,12295874-12295976,12296061-12296349,
12296460-12296611
Length = 241
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 95 PKDFGFSPFLLAQIGSNF 42
P DFGF P LA + NF
Sbjct: 60 PGDFGFDPLGLATVPENF 77
>06_01_1042 + 8187536-8187616,8187713-8188315
Length = 227
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +2
Query: 62 PVRTERNRSPLAA 100
P RTER R+PLAA
Sbjct: 61 PARTERERAPLAA 73
>04_01_0182 -
2058396-2058456,2058623-2058660,2058748-2058850,
2059485-2059567,2059651-2059944,2060440-2060572,
2060660-2060735,2060867-2060997,2061112-2061214,
2061305-2061578,2061661-2061732
Length = 455
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -3
Query: 185 IPSEPAHSPSPTFRSVSLCSQL*LFMTQTLPKDFGFSPFLLAQ 57
+PS+PA+ P P + L + +P DF F L Q
Sbjct: 58 LPSKPAYKPFPNKYMIKLTPWTNVEQVNEVPADFPSHVFNLVQ 100
>03_02_0903 +
12285874-12285918,12286715-12286820,12286906-12286961,
12287062-12287113,12287182-12287282,12287891-12288287,
12288852-12288937,12289061-12289078
Length = 286
Score = 25.0 bits (52), Expect = 8.3
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 43 KFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGECAGSDGI 186
K E + ++ GE SF + + EH +L + GDGE A D I
Sbjct: 45 KTESLTVAETGEP--SFTGMKKKKKKHVEHDTSLTEAGDGEDAIDDQI 90
>02_02_0522 -
11161385-11161537,11162513-11162668,11164176-11164298,
11164404-11164466,11164512-11164577,11165128-11165232,
11165336-11165435,11165520-11165590,11166037-11166093,
11167215-11167292,11167367-11167441,11168490-11168540,
11169015-11169094,11169560-11169660,11169749-11169810,
11170084-11170590
Length = 615
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 76 EKPKSFGSVCVMNNYNCEHKDTLRKVGDGECAGSD 180
E+ K SV V N+Y H + L G+C+ +D
Sbjct: 165 ERAKKVLSVAVYNHYKRIHCELLSSRSAGDCSETD 199
>01_06_1278 +
35939392-35939463,35939546-35939819,35939910-35940012,
35940127-35940257,35940384-35940465,35940554-35940686,
35941134-35941278,35941318-35941475,35941559-35941641,
35942276-35942330,35942466-35942503,35942670-35942730
Length = 444
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -3
Query: 185 IPSEPAHSPSPTFRSVSLCSQL*LFMTQTLPKDFGFSPFLLAQ 57
+PS+PA+ P P + L + +P DF F L Q
Sbjct: 58 LPSKPAYKPFPNKYMIKLTPWTNVEQVNEVPADFPSHVFNLVQ 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,825,232
Number of Sequences: 37544
Number of extensions: 102957
Number of successful extensions: 338
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 14,793,348
effective HSP length: 51
effective length of database: 12,878,604
effective search space used: 257572080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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