Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_F23
         (610 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    24   0.87 
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   3.5  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    22   4.6  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   4.6  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   8.1  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 24.2 bits (50), Expect = 0.87
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 355 GRKVPSSLRLRKPS*TKN 408
           GRK PSS R+  PS TK+
Sbjct: 63  GRKSPSSPRISSPSSTKS 80


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = +3

Query: 45  PIRKKRKYELGRPAANTKLGPQRIH 119
           P+R   ++    PA N   GP   H
Sbjct: 36  PLRTSYQHHFNSPAGNAHTGPTGTH 60


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
 Frame = -1

Query: 295 TTIAFFT-KVLVRTNSLLEAL*T---TSIIRVLRVEHSDP--HA-KFPVSRRRARYLVL 140
           TT+A++   V  +    L+ + T   T ++  L ++  D   H  KF  S +RARYL+L
Sbjct: 86  TTVAWYAGNVACKVIRFLQVVVTYASTYVLVALSIDRYDAIRHPMKFSGSWKRARYLIL 144


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = -1

Query: 535 RTDRADSPHMLTAVQCGIAPPDHPLPWTGAACSGTFFAVF*LRFLFMMASSASVSLAPFF 356
           R  +    HM+   + G+   D+P    G   + TF  VF L   F  +S+  ++   F 
Sbjct: 10  RASKGQDKHMVHWFRRGLRLHDNPSLREGLKGARTFRCVFVLDPWFAGSSNVGINKWRFL 69

Query: 355 L 353
           L
Sbjct: 70  L 70



 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 509 VWRVGPVSAVAPMVTFGKVKSWSSTLGR 592
           VW+ G   A+A +    + K+W ++ GR
Sbjct: 223 VWQGGESEALARLERHLERKAWVASFGR 250


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -1

Query: 391 ASSASVSLAPFFLPSGSR*WLSYHCLKGVASTTTIAFFT 275
           ASS SV+ AP    S +      H   G  S+ TIA  T
Sbjct: 171 ASSPSVTAAPHLRDSPNYIKPQLHVSTGSTSSPTIASAT 209


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,446
Number of Sequences: 336
Number of extensions: 3606
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)