Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_F23
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)              202   1e-52
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)           54   9e-08
SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_12094| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.00041)       28   5.1  
SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_58318| Best HMM Match : K-box (HMM E-Value=5.6)                     27   9.0  
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)                 27   9.0  
SB_26581| Best HMM Match : SspP (HMM E-Value=2.7)                      27   9.0  
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)                   27   9.0  
SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)              27   9.0  
SB_17597| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
          Length = 192

 Score =  202 bits (494), Expect = 1e-52
 Identities = 93/135 (68%), Positives = 110/135 (81%)
 Frame = +3

Query: 45  PIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSECSTRKTRII 224
           P+R KRK+ELGRP ANTK+G +RIH VR+RGGN K+RA RLDT NF+WGSE  TRK RII
Sbjct: 4   PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKARII 63

Query: 225 DVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINK 404
           DVVYNASNNELVRTKTLVKN IV VD+TPFRQWYE+HY +P+GRKK  + TE E+ I+NK
Sbjct: 64  DVVYNASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNK 123

Query: 405 KRSQKTAKKVPEQAA 449
           KRS    +K+  + A
Sbjct: 124 KRSNHCTRKLEARKA 138



 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 39/60 (65%), Positives = 49/60 (81%)
 Frame = +1

Query: 427 RKYLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQCGRADGYIWEGKELEFYLRKIKSKK 606
           RK  +R+  +KV  G+EEQF TGRL ACV+SRPGQ GR DGYI EGKELEFY++K+K++K
Sbjct: 131 RKLEARKANAKVAPGMEEQFVTGRLYACVSSRPGQSGRCDGYILEGKELEFYIKKLKARK 190


>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
          Length = 147

 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 24/77 (31%), Positives = 46/77 (59%)
 Frame = +3

Query: 105 PQRIHLVRSRGGNTKYRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKN 284
           P++I   ++ GG+TK +ALR++ G +   S+    +  I+ V+++ +N E +    +VK 
Sbjct: 37  PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFANKEHIERNVIVKG 96

Query: 285 AIVVVDATPFRQWYESH 335
           +IV VD  PF  W++ +
Sbjct: 97  SIVQVDNKPFEDWFQEY 113


>SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 230

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 204 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 317
           T++ +I D++ N   N  VR +TL+ NA +++D   F+
Sbjct: 18  TKRKKIADILSNEIRN--VRERTLILNAALIIDICVFK 53


>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2537

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 21  RATGGKRAPIRKKRKYELGRPAANTKLGP 107
           R  GG R P+++   +E  +P+ N + GP
Sbjct: 769 RRGGGSRVPVKRSSSFENRKPSPNRRRGP 797


>SB_12094| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.00041)
          Length = 754

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 22/85 (25%), Positives = 34/85 (40%)
 Frame = +1

Query: 319 SGMKATTCCHSEGRKVPSSLRLRKPS*TKNAVKRQRRKYLSRQRLSKVEGGLEEQFHTGR 498
           S  K +     E RK PSS   +KPS      K +     S++  +        Q  TG+
Sbjct: 382 SPSKTSQRAFRETRKSPSSTTTKKPSQVNQLQKAKNPLQASKKSPTNKPRPTVTQAKTGK 441

Query: 499 LLACVASRPGQCGRADGYIWEGKEL 573
            +A   +R     +     W+G+EL
Sbjct: 442 GVAKKTTREISNKQTSSTSWQGEEL 466


>SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1660

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 409  AVKRQRRKYLSRQRLSKVEGGLEE-QFHTGRLLACVASRPGQCGRADGYIWEGKELE 576
            AVKR R K L  +  S+ E  L++ +    RL AC+    G C  A+  + EG +LE
Sbjct: 1358 AVKR-RMKSLLAELDSRSESKLDKLRTEKVRLEACLRGAQGSCEFAETVLSEGNDLE 1413


>SB_58318| Best HMM Match : K-box (HMM E-Value=5.6)
          Length = 584

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/64 (25%), Positives = 33/64 (51%)
 Frame = +3

Query: 288 IVVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKVPEQAAPVQGRG 467
           ++  ++ P   W E   LLP  R+KG +  + E ++ + +R + ++   P   A ++G+ 
Sbjct: 45  LMPANSRPEEVWREFDPLLPGRRQKGPESLDPENSLFSLRRRRPSS--FPNVDATLRGQD 102

Query: 468 WSGG 479
            S G
Sbjct: 103 ISAG 106


>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
          Length = 1421

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 529 QCGRADGYIWEGKELEFYLRKIKSKKG 609
           QC  AD Y   G + +FYL ++++K G
Sbjct: 36  QCLTADKYAQPGCDPDFYLEELRNKSG 62


>SB_26581| Best HMM Match : SspP (HMM E-Value=2.7)
          Length = 135

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +3

Query: 348 LGRKKGAKLTEAEEAIINKKRSQKTAKKVPEQAAPVQGRGWSGGAIP 488
           L  KK  KLT  E A +NKK+ +K  +K  +        G +  AIP
Sbjct: 39  LAEKKEKKLTPWE-AYLNKKKEKKKERKKQKNKTEHNDEGEADDAIP 84


>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
          Length = 905

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 415 KRQRRKYLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQCGRADGYIWEGK 567
           ++   K +   +L+ +EG  E   H G LL    S    C R  GY  +G+
Sbjct: 136 EKYTEKKIRSDKLTWIEGNEEGASHIGDLLLKYDSLVSSCSRRIGYDIQGR 186


>SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)
          Length = 2007

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 289  LSWWMPHLSGSGMKATTCCHSEGRKVPSSLRL 384
            L+ WM HL    +     CH+EGR   + L L
Sbjct: 1881 LTIWMKHLENWPLHMPIVCHAEGRTTAAILLL 1912


>SB_17597| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 529 QCGRADGYIWEGKELEFYLRKIKSKKG 609
           QC  AD Y   G + +FYL ++++K G
Sbjct: 36  QCLTADKYAQPGCDPDFYLEELRNKSG 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,483,269
Number of Sequences: 59808
Number of extensions: 483467
Number of successful extensions: 1114
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)