Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_F23
         (610 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...   183   9e-47
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...   175   1e-44
At1g73260.1 68414.m08478 trypsin and protease inhibitor family p...    29   1.8  
At4g03390.1 68417.m00461 leucine-rich repeat transmembrane prote...    28   5.6  
At1g22830.1 68414.m02850 pentatricopeptide (PPR) repeat-containi...    27   7.4  
At5g27240.1 68418.m03249 DNAJ heat shock N-terminal domain-conta...    27   9.7  
At4g25860.1 68417.m03719 oxysterol-binding family protein contai...    27   9.7  
At4g11490.1 68417.m01847 protein kinase family protein contains ...    27   9.7  
At3g21750.1 68416.m02744 UDP-glucoronosyl/UDP-glucosyl transfera...    27   9.7  

>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score =  183 bits (445), Expect = 9e-47
 Identities = 86/121 (71%), Positives = 100/121 (82%), Gaps = 1/121 (0%)
 Frame = +3

Query: 3   DHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALRLDTGN 179
           D  HKRRATGGK+   RKKRKYE+GR  ANTKL   + +  +R RGGN K+RALRLDTGN
Sbjct: 6   DSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGN 65

Query: 180 FAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRK 359
           ++WGSE +TRKTR++DVVYNASNNELVRTKTLVK+AIV VDA PF+QWY SHY + LGRK
Sbjct: 66  YSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVELGRK 125

Query: 360 K 362
           K
Sbjct: 126 K 126



 Score = 91.9 bits (218), Expect = 3e-19
 Identities = 40/61 (65%), Positives = 50/61 (81%)
 Frame = +1

Query: 427 RKYLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQCGRADGYIWEGKELEFYLRKIKSKK 606
           RK  SRQ    ++  +E+QF +GRLLAC++SRPGQCGRADGYI EGKELEFY++KI+ KK
Sbjct: 158 RKIASRQEGRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKK 217

Query: 607 G 609
           G
Sbjct: 218 G 218


>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score =  175 bits (427), Expect = 1e-44
 Identities = 86/130 (66%), Positives = 99/130 (76%), Gaps = 1/130 (0%)
 Frame = +3

Query: 3   DHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALRLDTGN 179
           D  HKRRATGGK+   RKKRKYELGR  ANTKL   + +  +R RGGN K+RALRLDTGN
Sbjct: 6   DSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGN 65

Query: 180 FAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRK 359
           F+WGSE  TRKTRI+DV YNASNNELVRT+TLVK+AIV VDA PF+Q Y  HY + +GRK
Sbjct: 66  FSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGRK 125

Query: 360 KGAKLTEAEE 389
           K  +    EE
Sbjct: 126 KKGEAVTTEE 135



 Score = 91.9 bits (218), Expect = 3e-19
 Identities = 41/62 (66%), Positives = 50/62 (80%)
 Frame = +1

Query: 424 RRKYLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQCGRADGYIWEGKELEFYLRKIKSK 603
           +RK   RQ    ++  LEEQF +GRLLAC+ASRPGQCGRADGYI EGKELEFY++K++ K
Sbjct: 143 QRKLEMRQEGRALDSHLEEQFSSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQKK 202

Query: 604 KG 609
           KG
Sbjct: 203 KG 204


>At1g73260.1 68414.m08478 trypsin and protease inhibitor family
           protein / Kunitz family protein similar to trypsin
           inhibitor propeptide [Brassica oleracea] GI:841208;
           contains Pfam profile PF00197: Trypsin and protease
           inhibitor
          Length = 215

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 255 LVRTKTLVKNAI-VVVDATPFRQWYESHYLLPLGRKKGAKLTEA 383
           L  T  L  NA   VVD      ++ES+Y+LP+ R +G  LT A
Sbjct: 16  LALTAVLASNAYGAVVDIDGNAMFHESYYVLPVIRGRGGGLTLA 59


>At4g03390.1 68417.m00461 leucine-rich repeat transmembrane protein
           kinase, putative similar to Z. mays leucine-rich repeat
           transmembrane protein kinase LRRTPK 1, GenBank accession
           number AF023164
          Length = 776

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 568 LYLPKCNHRRDRTDRADSPHMLTA 497
           L LPKC  RR+  +R   PH + A
Sbjct: 337 LLLPKCARRREHANRVFKPHQVGA 360


>At1g22830.1 68414.m02850 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat.  Gene
           continues on the 3' end of BAC F19G10 gb|AF000657 gene
           F19G10.21
          Length = 703

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 386 LSLSELGTFLPSEWQQVVAFIPLPERCGIHHDNSI 282
           L++SE+  F+P  W+Q+    P+ E    H D S+
Sbjct: 13  LTVSEICKFIPQSWKQLPR--PISETSKTHDDESV 45


>At5g27240.1 68418.m03249 DNAJ heat shock N-terminal
           domain-containing protein
          Length = 1104

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -2

Query: 270 FWYAPIHC*RHYKQHQ*YESCGLNIQIPMRSFQYQDAG 157
           FW    HC   YK  + Y +  LN  I  RS+   D G
Sbjct: 159 FWTCCEHCGYRYKYLRKYVNILLNCNICQRSYMAYDTG 196


>At4g25860.1 68417.m03719 oxysterol-binding family protein contains
           Pfam profile PF01237: Oxysterol-binding protein
          Length = 386

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
 Frame = +3

Query: 210 KTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYE-SHYLLPLG--RKKGAK-LT 377
           KT  ++V+YNA+ N        VKN   V+++     W E S  +L     R + AK L 
Sbjct: 276 KTGGLEVIYNANENITGLKPPTVKNLQEVMESESTIVWSEVSEGILKKDWERAREAKILV 335

Query: 378 EAEEAIINKKRSQKTAKKVPEQAAPVQ-GRGW 470
           E ++    K+R       VP+  + V+ G+ W
Sbjct: 336 EEKQREALKQREASGESWVPKHFSVVKDGKDW 367


>At4g11490.1 68417.m01847 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 636

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -1

Query: 310 GVASTTTIAFFTKVLVRTNSLLEAL*TTSIIRVLRVEHSDPHAKFP 173
           G     ++ FF  ++V T  ++  L T  ++ V R   +DP  + P
Sbjct: 258 GSKRNISVGFFVAIVVATGVVISVLSTLVVVLVCRKRKTDPPEESP 303


>At3g21750.1 68416.m02744 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 473

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 20/62 (32%), Positives = 32/62 (51%)
 Frame = -1

Query: 307 VASTTTIAFFTKVLVRTNSLLEAL*TTSIIRVLRVEHSDPHAKFPVSRRRARYLVLPPRD 128
           + +TT +A   K+LV +++ L     T I+   RV      + +  S  R RY++LP RD
Sbjct: 16  IRATTALA---KLLVASDNRLSV---TLIVIPSRVSDDASSSVYTNSEDRLRYILLPARD 69

Query: 127 LT 122
            T
Sbjct: 70  QT 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,024,970
Number of Sequences: 28952
Number of extensions: 335951
Number of successful extensions: 904
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)