Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_F21
(304 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 25 2.4
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 24 4.3
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 24 5.6
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 24 5.6
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 23 7.5
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 23 7.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 23 9.9
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 23 9.9
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 23 9.9
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual 23 9.9
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.0 bits (52), Expect = 2.4
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -3
Query: 77 PRYNLHCLKTCRSPHDYLHRRQLC 6
P++N HCLK C L + C
Sbjct: 711 PKFNRHCLKICERRLPLLQQSFFC 734
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 24.2 bits (50), Expect = 4.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1
Query: 184 EIHDHCPSVP 213
E+H HCP VP
Sbjct: 100 EVHHHCPGVP 109
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 23.8 bits (49), Expect = 5.6
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +2
Query: 68 YSGVANPYISLSKTFSEMNPDYFTMANKIYVGNKYTLDEKFTITVRQYQSEVETI-DFSD 244
+S + P S +T D + + N++ + KY LD+ + V E ++I F D
Sbjct: 31 FSNIKIPSTSPIQTIVTKGLDNWQIYNQLALAAKYALDDLPQVDVENEDEEEDSITSFQD 90
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 23.8 bits (49), Expect = 5.6
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +2
Query: 164 NKYTLDEKFTITVRQYQSEVET--IDFSDTK 250
N+ TLDE++ T+R + E I F DT+
Sbjct: 51 NRQTLDEEYGSTIRPNEGEAANYGIYFDDTE 81
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 23.4 bits (48), Expect = 7.5
Identities = 13/55 (23%), Positives = 26/55 (47%)
Frame = +2
Query: 89 YISLSKTFSEMNPDYFTMANKIYVGNKYTLDEKFTITVRQYQSEVETIDFSDTKK 253
+ +KT S Y T+ + + + L E+F +++++ + DF DT K
Sbjct: 95 FYDTNKTDSVDGMVYTTIVDSVELDPNDPLIEQFKDVFNRFKADGQEKDFEDTDK 149
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 23.4 bits (48), Expect = 7.5
Identities = 9/36 (25%), Positives = 17/36 (47%)
Frame = +2
Query: 116 EMNPDYFTMANKIYVGNKYTLDEKFTITVRQYQSEV 223
E P+Y + A +G ++ D + +VR Y +
Sbjct: 237 EFFPNYTSAAGVFAIGEMFSYDPNVSCSVRNYLDSI 272
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 23.0 bits (47), Expect = 9.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 81 ATPL*SPLPKNLSISARLPSPAP 13
AT S LP + S A +PSPAP
Sbjct: 1512 ATAPSSTLPPSQSSFAHVPSPAP 1534
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 23.0 bits (47), Expect = 9.9
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 86 PYI-SLSKTFSEMNPDYFTMANKIYVGNKYTLD 181
PY+ + F+ + PDY ++ K+Y + +D
Sbjct: 25 PYVVPIQPVFAPLPPDYRSLYKKLYGQGAFLVD 57
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 23.0 bits (47), Expect = 9.9
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 80 ANPYISLSKTFSEMNPDYFTMANKIYVGNKYTLDEKFTIT--VRQYQSEVETIDFSDTKK 253
A+ ++ ++K + +NP + +A +I V + TIT V ++ + I+ S+ K+
Sbjct: 436 ASKFVEVAKDWQVVNPQTWLIAPEINVNKSFGSVNNETITEMVSEFTVTKDMIEKSNFKR 495
>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 23.0 bits (47), Expect = 9.9
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -3
Query: 131 NPDSSPRTFYLS*CTDWQPRYNLHCL 54
NP SSPRT W R LH L
Sbjct: 361 NPSSSPRTIVYFEKFPWFVRVYLHTL 386
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,268,986
Number of Sequences: 5004
Number of extensions: 24555
Number of successful extensions: 72
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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