Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_F21
(304 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0043 - 25366965-25368211,25368555-25369070,25369185-25370091 29 0.92
10_01_0007 - 79867-79950,80258-80303,80409-80641,80765-80836,811... 27 2.1
05_07_0209 + 28420008-28421510 27 3.7
04_04_1299 + 32450998-32451134,32451575-32452304,32452856-324530... 27 3.7
06_03_1286 - 29000688-29001526,29001982-29002075,29002480-290025... 26 4.9
03_06_0144 - 31969609-31969866,31969961-31970371,31970472-319705... 26 4.9
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442... 26 6.5
01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588... 26 6.5
04_04_0945 - 29561874-29562057,29563244-29563512 25 8.6
>02_05_0043 - 25366965-25368211,25368555-25369070,25369185-25370091
Length = 889
Score = 28.7 bits (61), Expect = 0.92
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 107 FYLS*CTDWQPRYNLHCLKTC 45
+ L CTD+ P+Y HC +C
Sbjct: 296 YLLDGCTDYNPKYKEHCSTSC 316
>10_01_0007 -
79867-79950,80258-80303,80409-80641,80765-80836,
81135-81230,81506-81607,81684-82349
Length = 432
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 29 SRAEIDKFLGNGDYSGVANPYISLSKTFSEMNPDYFTMANKIYV-GNKYT 175
S A+ D GD V + + L+ F E++PD+ ++N +Y+ G+ Y+
Sbjct: 152 SYADTDAGFRTGDTIAVHHILVFLNNWFQEVHPDF--LSNPLYIAGDSYS 199
>05_07_0209 + 28420008-28421510
Length = 500
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 113 SEMNPDYFTMANKIYVGNKYTLDEKFTITVRQYQSEVETID 235
+ MNP FT+ + NK +L E+FT ++ Y S ++++
Sbjct: 310 ASMNPRVFTVVEQEADHNKSSLLERFTNSLFYYASMFDSLE 350
>04_04_1299 +
32450998-32451134,32451575-32452304,32452856-32453053,
32453398-32454065,32454555-32454978,32455917-32456009,
32456101-32456295,32456378-32456470,32456718-32456930,
32457015-32457104,32457239-32457400
Length = 1000
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 203 RQYQSEVETIDFSDTKKAADIINQWANE 286
R Y SE+E + + K AAD +WA++
Sbjct: 524 RGYLSEIEKVAVAQRKLAADKFRKWASK 551
>06_03_1286 -
29000688-29001526,29001982-29002075,29002480-29002581,
29002638-29002710,29003747-29003804,29003859-29003904,
29003985-29004111,29004198-29004273,29004348-29004405,
29004490-29004588,29004679-29004807,29005333-29005454,
29005567-29005735,29005829-29005929,29006082-29006208,
29006284-29006373,29006516-29006602,29006703-29006963,
29007029-29007058
Length = 895
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 23 EGSRAEIDKFLGNGDYSGVANP 88
+G +D F+G GD+SG+ +P
Sbjct: 778 DGGTKMLDAFMGVGDFSGMIHP 799
>03_06_0144 -
31969609-31969866,31969961-31970371,31970472-31970542,
31970637-31970723,31970816-31971389
Length = 466
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 23 EGSRAEIDKFLGNGDYSGVANPYISLSKTFSEM 121
E +R + + L +GDY GVA+P + S EM
Sbjct: 326 EWARPAMARALADGDYGGVADPRLEGSYDAVEM 358
>04_04_0239 -
23843235-23843243,23843334-23844047,23844138-23844287,
23844389-23844601,23844697-23844811,23844919-23846300,
23847217-23847279
Length = 881
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 63 PLPKNLSISARLPSPAP 13
PLPK +SI A P+PAP
Sbjct: 759 PLPKPVSIPASGPAPAP 775
>01_06_1535 +
38057802-38057999,38058338-38058437,38058730-38058890,
38059166-38059363,38059442-38059534,38059732-38059854,
38060637-38060884,38061004-38061175,38061407-38061493,
38061523-38061786,38062415-38062577,38062839-38062926,
38063010-38063079,38063566-38063694,38063773-38063811,
38065539-38065760,38065935-38065999,38066095-38066288,
38066539-38066805,38066908-38066995,38067091-38067216,
38067291-38067400,38067523-38067671
Length = 1117
Score = 25.8 bits (54), Expect = 6.5
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +2
Query: 35 AEIDKFLGNGDYSGVANPYISLSKTFSEMNPDYFTMANKIYVGNKYTLDEKFTITVRQYQ 214
A ++ LG+GDYS + + + T + N T+ + K T + + + Q
Sbjct: 543 ALLESKLGHGDYSASSTKVLRMVNTLAVDNEAKQTI-EALQAELKKTKERLQAVEELKGQ 601
Query: 215 SEVET-IDFSDTKKAADIINQWANEKTR 295
++V T +D + +K A + NQ A + R
Sbjct: 602 ADVGTVVDVNIAEKLAQLKNQIATLEKR 629
>04_04_0945 - 29561874-29562057,29563244-29563512
Length = 150
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 8 KAGAGEGSRAEIDKFLGNGDYSGVA 82
++G+G GSR EI +G G S A
Sbjct: 6 ESGSGSGSRGEITLAIGGGGASAAA 30
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,044,246
Number of Sequences: 37544
Number of extensions: 153239
Number of successful extensions: 433
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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