Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_F20
         (528 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   9e-07
SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)                  36   0.021
SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)                  33   0.11 
SB_50062| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_56273| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_25350| Best HMM Match : Collagen (HMM E-Value=0)                    29   2.4  
SB_8505| Best HMM Match : CitD (HMM E-Value=0.91)                      28   5.5  
SB_19841| Best HMM Match : Myb_DNA-binding (HMM E-Value=1.1)           28   5.5  
SB_9975| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-38)                  28   5.5  
SB_31099| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_14780| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_13083| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_18786| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_30060| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_21354| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.6  

>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 50.4 bits (115), Expect = 9e-07
 Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
 Frame = +3

Query: 174 GTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCG--AGTAADTEMTTQ 347
           GTT +   +  GVI+  D+RAT  + ++ +  +K+  +  N Y  G  AG AAD     +
Sbjct: 28  GTTTLAFKFKHGVIVAVDSRATAGSYIASQTVKKV--IEINPYLLGTMAGGAADCSFWER 85

Query: 348 SVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALV 473
            +A Q  +  L     + V  A+ +L  M++ Y+G +G ++V
Sbjct: 86  LLAKQCRIYELRNKERISVAAASKILANMVYYYKG-MGLSMV 126


>SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)
          Length = 938

 Score = 35.9 bits (79), Expect = 0.021
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +3

Query: 165  TKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAAD 329
            T TGT+++GI +  GV++ ADT  +  ++   +N  ++  +  N     AG  AD
Sbjct: 872  TTTGTSVLGIKFNGGVLMAADTLGSYGSLARYRNISRLMRVNENTIIGAAGDYAD 926


>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 215

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 6/131 (4%)
 Frame = +3

Query: 153 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 332
           A +A K G+T VG+   + V+LG + +A    +   +  +KI  L  ++    AG  AD 
Sbjct: 24  AQEAVKKGSTAVGVRGNNIVVLGVERKAVAK-LQEPRTVRKICTLDDHVLMAFAGLTADA 82

Query: 333 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY-----QGHIGAALVLGGVDRSG 497
            +       + +  +L     V +E     +  +  RY     +   G + ++ G D  G
Sbjct: 83  RILVNKARVECQSHKLTVEDPVTLEYITRFIATLKQRYTQSNGRRPFGISTLIVGFDFDG 142

Query: 498 -PHIFCIYPHG 527
            P ++   P G
Sbjct: 143 TPRLYQTDPSG 153


>SB_50062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +3

Query: 132 LAEKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQ 272
           L   G P P  +  G   VG I A G +L + TRA     V++ NC+
Sbjct: 84  LKRLGIPPPLLSMGGAEFVGAIRARGGLLFSKTRAARGRQVANVNCE 130


>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1670

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 327 DTEMTTQSVASQLELQRLHT--GRTVPVETAATLLKRMLFRYQGH 455
           D +     V S  E+ RLHT  GR+ PVE    LLK+ L + + H
Sbjct: 250 DKKDEDSKVMSSQEVSRLHTPQGRSTPVEPHLQLLKQALKQVKPH 294


>SB_56273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
 Frame = -1

Query: 480 RLGLKLPQYVLGSETTFFLRE*RRFQLAPSGRYVNAAVRVAKQPIVSSSQYL-------- 325
           RLGL++  +   ++    L+E  ++++      ++   R AK+ IV   QY         
Sbjct: 287 RLGLEISMFERYAKKAIMLKE--QYRMRFYHLEISMFERYAKKAIVLKEQYRMRYAKKAI 344

Query: 324 ---QQYRHHNNTCSKPSNEFFD 268
              +QYR H   C  PS +F+D
Sbjct: 345 VLKEQYRMHAEICHFPSEQFYD 366


>SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1681

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +3

Query: 306 CGAGTAADTEMTTQSVASQLELQR 377
           C  GTAA T +T QSVAS ++++R
Sbjct: 637 CKRGTAALTNVTKQSVASVVDIER 660


>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1112

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 40   QKTYKRPWLPYYYLKYQHQDFRSKTVNEMLSS 135
            ++ Y  P+ PYY+  Y H  +    ++  LS+
Sbjct: 936  RRHYHHPYYPYYHQPYHHHQYHQLLISSSLST 967


>SB_8505| Best HMM Match : CitD (HMM E-Value=0.91)
          Length = 909

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
 Frame = +3

Query: 270 QKIHYLAS-NMYCCGAGTAADTEMTTQSVASQLELQR--LHTGRTVPVETAATLLKRMLF 440
           QK+H +      CC        +         LE+    +H+G  +PVE    L+  +L 
Sbjct: 82  QKLHLVYEITALCCAFNPKNLLQKVVDLCVESLEMYNGDVHSGDGLPVEVTLDLVNYLLK 141

Query: 441 RYQGHIGAALV 473
           +  GH G  ++
Sbjct: 142 QESGHDGVTML 152


>SB_19841| Best HMM Match : Myb_DNA-binding (HMM E-Value=1.1)
          Length = 753

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 399 APSGRY-VNAAVRVAKQPIVSSSQYLQQYRHHNNTCSKPSN 280
           +PSG   VN+A   +  PIV+SS +L       + C KP N
Sbjct: 683 SPSGNATVNSAPPGSTTPIVNSSPHLTLTEAEGSFCPKPDN 723


>SB_9975| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-38)
          Length = 1101

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -2

Query: 359 RSNRLCRHLSICSSTGTTTIHVRSQVMNFLTILIGNDSIFSSPCIGTKNNAVSVNN 192
           R+  LC  +++C   G   I V    + FL   I + S+FS   + T+  +++  N
Sbjct: 384 RAANLCLAVTLCGPEGGRLIEVTKGNLLFLCSSISSQSLFSGHSLRTRGWSLNRGN 439


>SB_31099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -2

Query: 323 SSTGTTTIHVRSQVMNFLTILIGNDSIFSSPCIGTKNNAVSVNNPYYCSTSLSSFR 156
           SS  T T +V  Q+MNF+ I +  ++++++  +   N+ +   NP      +  FR
Sbjct: 236 SSFATVTPYVAIQIMNFMLISLSFNTLYTALVLAYANSFI---NPLVYMLRMKPFR 288


>SB_14780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 147 FPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKN 266
           F  PK  KT TT+     +  + +G  TR ++ T+ S  N
Sbjct: 40  FNTPKNKKTNTTLTRAQNSSNLAIGTCTRTSQYTIESKPN 79


>SB_13083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 147 FPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQK 275
           F  PK  KT TT+     +  + +G  TR  + T    KN  K
Sbjct: 41  FNTPKNKKTNTTLTRAQNSSNLAIGTCTRTGQYTRTDQKNLDK 83


>SB_18786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1056

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +3

Query: 312 AGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHI 458
           +G    + +TT SVASQL+  + +T RT+   + AT +  M+    GH+
Sbjct: 753 SGQVPSSGLTTSSVASQLQ-TKTNTVRTISRPSTATTVS-MVRTLPGHL 799


>SB_30060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = -1

Query: 372 AVRVAKQPIVSSSQYLQQYRHHNNTCSKPSNEFFDNSY 259
           AVR+ ++P+    ++ ++  HHN+   KP++ F + ++
Sbjct: 76  AVRIERKPLRYEQEF-RKLMHHNHARRKPASYFMNTNH 112


>SB_21354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 883

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 374 LQFE-LRSNRLCRHLSICSSTGTTTIHVRSQVMNFLTILIGNDSIFS 237
           L++E LR N L R  +     GTT  + +  + N   I  G DSI +
Sbjct: 206 LEYESLRDNNLARSAAAAYQNGTTFFYEQVNLHNTFHISKGTDSIIN 252


>SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2202

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 360  AKQPIVSSSQYLQQYRHHNNTCSKPSNEFFDNSYRKRQYF 241
            + Q ++SSS    + +  ++T S+ +  FFD   R R++F
Sbjct: 2147 SSQSLISSSCRSSRCQRSSSTSSRSTRSFFDLKIRLRRWF 2186


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,358,250
Number of Sequences: 59808
Number of extensions: 314543
Number of successful extensions: 1217
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)