Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_F20
(528 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2) (P... 213 5e-56
At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2) (P... 213 5e-56
At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1) id... 213 8e-56
At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1) id... 213 8e-56
At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1) (P... 76 1e-14
At3g26340.1 68416.m03286 20S proteasome beta subunit E, putative... 64 7e-11
At1g13060.1 68414.m01514 20S proteasome beta subunit E1 (PBE1) (... 62 2e-10
At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1) (... 53 1e-07
At3g14290.1 68416.m01808 20S proteasome alpha subunit E2 (PAE2) ... 49 2e-06
At1g53850.1 68414.m06129 20S proteasome alpha subunit E1 (PAE1) ... 49 2e-06
At3g60820.1 68416.m06804 20S proteasome beta subunit F1 (PBF1) 41 6e-04
At1g79210.1 68414.m09235 20S proteasome alpha subunit B, putativ... 40 8e-04
At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1) (... 40 8e-04
At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1) (... 36 0.022
At1g56450.1 68414.m06492 20S proteasome beta subunit G1 (PBG1) (... 35 0.029
At2g21370.2 68415.m02542 xylulose kinase, putative similar to xy... 31 0.63
At2g21370.1 68415.m02543 xylulose kinase, putative similar to xy... 31 0.63
At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1) ... 29 1.5
At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2) ... 29 1.5
At5g04020.1 68418.m00382 calmodulin-binding protein-related (PIC... 28 3.4
At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive eff... 28 3.4
At4g33470.1 68417.m04754 histone deacetylase family protein simi... 28 4.5
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 27 5.9
At3g46800.1 68416.m05080 DC1 domain-containing protein contains ... 27 7.8
>At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 213 bits (521), Expect = 5e-56
Identities = 100/157 (63%), Positives = 119/157 (75%)
Frame = +3
Query: 57 TMASILLPEIPAPGFSFENCQRNAFLAEKGFPAPKATKTGTTIVGIIYADGVILGADTRA 236
+ +S+ +P P GFSF+ C+RN L +KG AP KTGTTIVG+I+ DGVILGADTRA
Sbjct: 2 SQSSVDIP--PKGGFSFDLCKRNDMLTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRA 59
Query: 237 TENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAA 416
TE +V+DKNC+KIHY+A N+YCCGAGTAADTE T V+SQL L R TGR V TA
Sbjct: 60 TEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVVTAL 119
Query: 417 TLLKRMLFRYQGHIGAALVLGGVDRSGPHIFCIYPHG 527
TLLK+ LF YQGH+ AALVLGGVD +GPH+ IYPHG
Sbjct: 120 TLLKKHLFSYQGHVSAALVLGGVDITGPHLHTIYPHG 156
>At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 213 bits (521), Expect = 5e-56
Identities = 100/157 (63%), Positives = 119/157 (75%)
Frame = +3
Query: 57 TMASILLPEIPAPGFSFENCQRNAFLAEKGFPAPKATKTGTTIVGIIYADGVILGADTRA 236
+ +S+ +P P GFSF+ C+RN L +KG AP KTGTTIVG+I+ DGVILGADTRA
Sbjct: 2 SQSSVDIP--PKGGFSFDLCKRNDMLTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRA 59
Query: 237 TENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAA 416
TE +V+DKNC+KIHY+A N+YCCGAGTAADTE T V+SQL L R TGR V TA
Sbjct: 60 TEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVVTAL 119
Query: 417 TLLKRMLFRYQGHIGAALVLGGVDRSGPHIFCIYPHG 527
TLLK+ LF YQGH+ AALVLGGVD +GPH+ IYPHG
Sbjct: 120 TLLKKHLFSYQGHVSAALVLGGVDITGPHLHTIYPHG 156
>At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 273
Score = 213 bits (519), Expect = 8e-56
Identities = 98/147 (66%), Positives = 113/147 (76%)
Frame = +3
Query: 87 PAPGFSFENCQRNAFLAEKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKN 266
P GFSF+ C+RN L +KG AP KTGTTIVG+I+ DGVILGADTRATE +V+DKN
Sbjct: 10 PKGGFSFDLCKRNDMLTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKN 69
Query: 267 CQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY 446
C+KIHY+A N+YCCGAGTAADTE T V+SQL L R TGR V TA TLLK+ LF Y
Sbjct: 70 CEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVITALTLLKKHLFSY 129
Query: 447 QGHIGAALVLGGVDRSGPHIFCIYPHG 527
QGH+ AALVLGGVD +GPH+ IYPHG
Sbjct: 130 QGHVSAALVLGGVDITGPHLHTIYPHG 156
>At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 267
Score = 213 bits (519), Expect = 8e-56
Identities = 98/147 (66%), Positives = 113/147 (76%)
Frame = +3
Query: 87 PAPGFSFENCQRNAFLAEKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKN 266
P GFSF+ C+RN L +KG AP KTGTTIVG+I+ DGVILGADTRATE +V+DKN
Sbjct: 10 PKGGFSFDLCKRNDMLTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKN 69
Query: 267 CQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY 446
C+KIHY+A N+YCCGAGTAADTE T V+SQL L R TGR V TA TLLK+ LF Y
Sbjct: 70 CEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVITALTLLKKHLFSY 129
Query: 447 QGHIGAALVLGGVDRSGPHIFCIYPHG 527
QGH+ AALVLGGVD +GPH+ IYPHG
Sbjct: 130 QGHVSAALVLGGVDITGPHLHTIYPHG 156
>At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1)
(PRCD) identical to cDNA proteasome subunit prcd
GI:2511593
Length = 233
Score = 76.2 bits (179), Expect = 1e-14
Identities = 34/106 (32%), Positives = 62/106 (58%)
Frame = +3
Query: 174 GTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSV 353
GTTI+G+ Y GV+LGAD+R + V+++ KI L N+Y C +G+AAD+++ + V
Sbjct: 12 GTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYV 71
Query: 354 ASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVDR 491
L + G+ V+ +A L++ + + + + L++GG D+
Sbjct: 72 RYFLHQHTIQHGQPATVKVSANLIRMLAYNNKNMLQTGLIVGGWDK 117
>At3g26340.1 68416.m03286 20S proteasome beta subunit E, putative
very strong similarity to SP|O23717 Proteasome subunit
beta type 5 precursor (EC 3.4.25.1) (20S proteasome
subunit E) (Proteasome epsilon chain) {Arabidopsis
thaliana}
Length = 273
Score = 63.7 bits (148), Expect = 7e-11
Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 1/147 (0%)
Frame = +3
Query: 90 APGFSFENCQRNAFLAEKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNC 269
AP F +K K K GTT + I+ +GV++ AD+RA+ +S ++
Sbjct: 30 APSFDLPRTTDFDGFQKKAVEMVKPAK-GTTTLAFIFKEGVMVAADSRASMGGYISSQSV 88
Query: 270 QKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQ 449
+KI + M AG AAD + +++ + L L R + V A+ LL ML+ Y+
Sbjct: 89 KKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSYR 148
Query: 450 G-HIGAALVLGGVDRSGPHIFCIYPHG 527
G + ++ G D +GP ++ + G
Sbjct: 149 GMGLSVGTMIAGWDETGPGLYYVDNEG 175
>At1g13060.1 68414.m01514 20S proteasome beta subunit E1 (PBE1)
(PRCE) identical to GB:O23717; identical to cDNA
proteasome subunit prce GI:2511595
Length = 274
Score = 62.1 bits (144), Expect = 2e-10
Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 2/157 (1%)
Frame = +3
Query: 63 ASILLPEIPA-PGFSFENCQRNAFLAEKGFPAPKATKTGTTIVGIIYADGVILGADTRAT 239
+S +L E+ + P F + +K K K GTT + I+ GV++ AD+RA+
Sbjct: 20 SSDMLDELSSVPSFDLPRTKEFDGFQKKAKDMLKHAK-GTTTLAFIFKGGVMVAADSRAS 78
Query: 240 ENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAAT 419
+S ++ +KI + M AG AAD + +++ + L L R + V A+
Sbjct: 79 MGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASK 138
Query: 420 LLKRMLFRYQG-HIGAALVLGGVDRSGPHIFCIYPHG 527
LL ML+ Y+G + ++ G D +GP ++ + G
Sbjct: 139 LLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEG 175
>At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1)
(PRC8) identical to proteasome subunit alpha type 3
SP:O23715, GI:12644056 from [Arabidopsis thaliana];
identical to cDNA proteasome subunit prc8 GI:2511591
Length = 249
Score = 53.2 bits (122), Expect = 1e-07
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 5/130 (3%)
Frame = +3
Query: 153 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 332
A KA T+VGI DG+++G + ++ N ++IH + + AG AAD
Sbjct: 27 AAKAVDNSGTVVGIKCKDGIVMGVEKLIASKMMLPGSN-RRIHSVHRHAGMAVAGLAADG 85
Query: 333 EMTTQSVASQLELQRLHTGRTVPVE-----TAATLLKRMLFRYQGHIGAALVLGGVDRSG 497
S+ G VPV+ A+ + L+ + G ++LGG DR G
Sbjct: 86 RQIVARAKSEARSYESVYGDAVPVKELSERVASYVHLCTLYWWLRPFGCGVILGGYDRDG 145
Query: 498 PHIFCIYPHG 527
P ++ I P G
Sbjct: 146 PQLYMIEPSG 155
>At3g14290.1 68416.m01808 20S proteasome alpha subunit E2 (PAE2)
identical to 20S proteasome subunit PAE2 GB:AAC32061
from [Arabidopsis thaliana]
Length = 237
Score = 49.2 bits (112), Expect = 2e-06
Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Frame = +3
Query: 153 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 332
A +A K G+T +G+ +GV+L + R T + ++ + +KI + ++ C +G AD
Sbjct: 27 AIEAIKLGSTAIGVKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDDHIGCAMSGLIADA 85
Query: 333 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY-QGH-------IGAALVLGGVD 488
+ + + R G + VE+ L + R+ +G G +L++ G D
Sbjct: 86 RTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHD 145
Query: 489 RSGPHIFCIYPHG 527
+GP ++ P G
Sbjct: 146 ENGPSLYYTDPSG 158
>At1g53850.1 68414.m06129 20S proteasome alpha subunit E1 (PAE1)
identical to 20S proteasome subunit PAE1 GI:3421087 from
[Arabidopsis thaliana]
Length = 237
Score = 49.2 bits (112), Expect = 2e-06
Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Frame = +3
Query: 153 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 332
A +A K G+T +G+ +GV+L + R T + ++ + +KI + ++ C +G AD
Sbjct: 27 AIEAIKLGSTAIGVKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDDHIGCAMSGLIADA 85
Query: 333 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY-QGH-------IGAALVLGGVD 488
+ + + R G + VE+ L + R+ +G G +L++ G D
Sbjct: 86 RTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHD 145
Query: 489 RSGPHIFCIYPHG 527
+GP ++ P G
Sbjct: 146 ENGPSLYYTDPSG 158
>At3g60820.1 68416.m06804 20S proteasome beta subunit F1 (PBF1)
Length = 223
Score = 40.7 bits (91), Expect = 6e-04
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Frame = +3
Query: 174 GTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSV 353
G T V I +D ++ ADTR + + ++ KIH LA +G AD + + +
Sbjct: 15 GGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSGFQADVKALQKVL 74
Query: 354 ASQ-LELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVDRSG 497
S+ L Q H + A L + F+ A VLGG+D G
Sbjct: 75 KSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLDEEG 123
>At1g79210.1 68414.m09235 20S proteasome alpha subunit B, putative
nearly identical to SP|O23708 Proteasome subunit alpha
type 2 (EC 3.4.25.1) (20S proteasome alpha subunit B)
{Arabidopsis thaliana} and to At1g16470
Length = 235
Score = 40.3 bits (90), Expect = 8e-04
Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 7/129 (5%)
Frame = +3
Query: 162 ATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMT 341
A +G T +GI ++GV++ + + + +V + + QKI +L N+ +G D +
Sbjct: 28 AVGSGQTSLGIKASNGVVIATEKKLP-SILVDEASVQKIQHLTPNIGTVYSGMGPDFRVL 86
Query: 342 TQSVASQLELQRLHTGRTVPV----ETAATLLKRMLFRYQGHI---GAALVLGGVDRSGP 500
+ Q E +PV AT+++ F G + G +L++ G D GP
Sbjct: 87 VRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQE--FTQSGGVRPFGVSLLVAGYDDKGP 144
Query: 501 HIFCIYPHG 527
++ + P G
Sbjct: 145 QLYQVDPSG 153
>At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1)
(PRC3) identical to proteasome subunit alpha type 2
SP:O23708, GI:6093778; identical to cDNA proteasome
subunit prc3 GI:2511573
Length = 235
Score = 40.3 bits (90), Expect = 8e-04
Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 7/129 (5%)
Frame = +3
Query: 162 ATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMT 341
A +G T +GI ++GV++ + + + +V + + QKI +L N+ +G D +
Sbjct: 28 AVGSGQTSLGIKASNGVVIATEKKLP-SILVDEASVQKIQHLTPNIGVVYSGMGPDFRVL 86
Query: 342 TQSVASQLELQRLHTGRTVPV----ETAATLLKRMLFRYQGHI---GAALVLGGVDRSGP 500
+ Q E +PV AT+++ F G + G +L++ G D GP
Sbjct: 87 VRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQE--FTQSGGVRPFGVSLLVAGYDDKGP 144
Query: 501 HIFCIYPHG 527
++ + P G
Sbjct: 145 QLYQVDPSG 153
>At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1)
(PRC9) identical to GB:AAC32057 from [Arabidopsis
thaliana] (Genetics (1998) 149 (2), 677-692); identical
to cDNA proteasome subunit prc9 GI:2511583
Length = 250
Score = 35.5 bits (78), Expect = 0.022
Identities = 18/85 (21%), Positives = 39/85 (45%)
Frame = +3
Query: 153 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 332
A +A + +GI+ DGV+L + + T + + + +K++ + ++ C AG +D
Sbjct: 24 AMEAIGNAGSAIGILSKDGVVLIGEKKVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDA 83
Query: 333 EMTTQSVASQLELQRLHTGRTVPVE 407
+ + Q + +PVE
Sbjct: 84 NILINTARVQAQRYTFMYQEPMPVE 108
>At1g56450.1 68414.m06492 20S proteasome beta subunit G1 (PBG1)
(PRCH) identical to 20S proteasome beta subunit (PBG1)
GI:3421123 [Arabidopsis thaliana]; identical to cDNA
proteasome subunit prch GI:2511597
Length = 246
Score = 35.1 bits (77), Expect = 0.029
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Frame = +3
Query: 171 TGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAAD-TEMTTQ 347
TGT+IV I Y DGV++ +D + + + KN +++ + + +G +D E+
Sbjct: 30 TGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEISDFQEILRY 89
Query: 348 SVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGA---ALVLGGV 485
L G ++ + L R+++ + LVLGGV
Sbjct: 90 LDELTLNDNMWDDGNSLGPKEIHNYLTRVMYNRRNKFNPLWNTLVLGGV 138
>At2g21370.2 68415.m02542 xylulose kinase, putative similar to
xylulose kinase (Xylulokinase) [Bacillus subtilis]
Swiss-Prot:P39211
Length = 385
Score = 30.7 bits (66), Expect = 0.63
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 66 SILLPEIPAPGFSFENCQRNAFLAEKGFPAPKATKTGTT 182
S LLP++ APG S N + +F + GFP TGTT
Sbjct: 147 SQLLPKVQAPGTSIGNL-KESFTRQFGFPDDCIVCTGTT 184
>At2g21370.1 68415.m02543 xylulose kinase, putative similar to
xylulose kinase (Xylulokinase) [Bacillus subtilis]
Swiss-Prot:P39211
Length = 478
Score = 30.7 bits (66), Expect = 0.63
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 66 SILLPEIPAPGFSFENCQRNAFLAEKGFPAPKATKTGTT 182
S LLP++ APG S N + +F + GFP TGTT
Sbjct: 240 SQLLPKVQAPGTSIGNL-KESFTRQFGFPDDCIVCTGTT 277
>At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1)
(gb|AAC32062.1)
Length = 278
Score = 29.5 bits (63), Expect = 1.5
Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 3/128 (2%)
Frame = +3
Query: 153 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKI--HYLASNMYCCGAGTAA 326
A +A K G+ +G+ V+L +A + K+ H + G
Sbjct: 25 AMEAVKQGSAAIGLRSRSHVVLACVNKAQSELSSHQRKIFKVDDHIGVAIAGLTADGRVL 84
Query: 327 DTEMTTQSVASQLELQR-LHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVDRSGPH 503
M ++S+ + L GR V V A ++ G L++GG+D SG H
Sbjct: 85 SRYMRSESINHSFTYESPLPVGRLV-VHLADKAQVCTQRSWKRPYGVGLLVGGLDESGAH 143
Query: 504 IFCIYPHG 527
++ P G
Sbjct: 144 LYYNCPSG 151
>At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2)
(PRC2B) (PRS1) identical to GB:AAC32063 from
[Arabidopsis thaliana] (Genetics 149 (2), 677-692
(1998)); identical to cDNA proteasome subunit prc2b
GI:2511585
Length = 277
Score = 29.5 bits (63), Expect = 1.5
Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 3/128 (2%)
Frame = +3
Query: 153 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKI--HYLASNMYCCGAGTAA 326
A +A K G+ +G+ V+L +A + K+ H + G
Sbjct: 25 AMEAVKQGSAAIGLRSRSHVVLACVNKAQSELSSHQRKIFKVDDHIGVAIAGLTADGRVL 84
Query: 327 DTEMTTQSVASQLELQR-LHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVDRSGPH 503
M ++S+ + L GR V V A ++ G L++GG+D SG H
Sbjct: 85 SRYMRSESINHSFTYESPLPVGRLV-VHLADKAQVCTQRSWKRPYGVGLLVGGLDESGAH 143
Query: 504 IFCIYPHG 527
++ P G
Sbjct: 144 LYYNCPSG 151
>At5g04020.1 68418.m00382 calmodulin-binding protein-related (PICBP)
contains similarity to potato calmodulin-binding protein
PCBP GI:17933110 from [Solanum tuberosum]
Length = 1495
Score = 28.3 bits (60), Expect = 3.4
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Frame = +3
Query: 231 RATENTVVSDKNCQKIHYLASNMYCCGAGT----AADTEMTTQSVASQLELQRLHTGRTV 398
+AT ++ + + ++ + + + YC G AAD S+ + ++R R
Sbjct: 210 KATCSSAMKGSSSKRSNDVCTYRYCSLHGRRHSHAADNNAGVPSLKRFVSMRRKFMNRQK 269
Query: 399 PVETAATLLKRMLFRYQGHIGAALV 473
V LLKR L R +G +G +V
Sbjct: 270 SVNRRLVLLKRTLSRKRGPLGGRVV 294
>At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1939
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 324 QQYRHHNNTCSKPSNEFFDN 265
QQYR H C PS F+DN
Sbjct: 1502 QQYRMHPEICRFPSMHFYDN 1521
>At4g33470.1 68417.m04754 histone deacetylase family protein similar
to histone deacetylase 10 isoform alpha [Homo sapiens]
GI:15213865; contains Pfam profile PF00850: Histone
deacetylase family
Length = 423
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 453 VLGSETTFFLRE*RRFQLAPSGRYVNAAVRVAKQPIVSSSQYLQQYR 313
+ GS + R++ L PSG +N + K P++ S Q L R
Sbjct: 18 ISGSRNICKKNQWRKYLLKPSGSSINCSFSTEKNPLLPSIQQLADAR 64
>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
nuclear gene encoding mitochondrial protein - Homo
sapiens, EMBL:AF026849 contains Pfam profile: ATPase
family PF00004
Length = 470
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 35 SYKKLISDHGFHIIT*NTSTRIFVRKLSTK 124
SY K + + G II N TR+F LST+
Sbjct: 158 SYIKYVVEEGKSIIVKNKQTRLFTNNLSTQ 187
>At3g46800.1 68416.m05080 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 682
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 439 NNILFKRVAAVSTGTVRPVCKRCSSSCE 356
+N + V +T RP C RCSS C+
Sbjct: 625 SNKIANGVVVPNTSICRPHCSRCSSRCK 652
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,361,265
Number of Sequences: 28952
Number of extensions: 223245
Number of successful extensions: 740
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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